LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi14g1270	ATGACTGTGAAAGAAAAGCTCGTCAGTCTTAAGAACAAAGCATACGACGGCAAAGAGGTCCGCTATAGAGGTGTCCGGAAGAGGCCTTGGGGCCGATACGCCGCCGAAATCCGAGATCCCGGCAAGAAGACCCGTGTTTGGTTGGGCACCTTCGACACGGCGGAGGAAGCCGCCCGGGCCTACGACGCTGCCGCTTTACAATTCCGCGGACACAAGGCCAAGATAAACTTCCCTTTGCCAAACGAAAAAGTGAACCAAAAACAGAGTCCCAGCGAGAGTAGCCCCATCGAGTCGTCCGGCTGTAATGGTCCGGAGCGCGAGATCACGCGTCGGCATGACGTCGGTCTGGTCCGGGAACGGGTCGCTTATCTTCCGCAGCACATGGCGTTTGGCGGAGGTGCTGCTGGTGGCGTAGAGGGCTTGGTAAGTCCGGCACTCCCGGTTTCCTTTATTGAGCAAGGTAAGTGGGCCAAGTTGGCGAGTCAGCATTATCCGGCGGGGTCGGGTGGTGGGATGCAGAGTGAGTGGGATTCGTCTTCCATGGTTAATTGTGAGGCAAAGAGAGCCCTCAATCTTGATCTTAACCTGGCTCCGCCAATGGACGCTTGA	609	0.5681	MTVKEKLVSLKNKAYDGKEVRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAALQFRGHKAKINFPLPNEKVNQKQSPSESSPIESSGCNGPEREITRRHDVGLVRERVAYLPQHMAFGGGAAGGVEGLVSPALPVSFIEQGKWAKLASQHYPAGSGGGMQSEWDSSSMVNCEAKRALNLDLNLAPPMDA	202

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi14g1270	202	Gene3D	AP2/ERF domain	20	79	IPR036955	GO:0003700\|GO:0006355
	Glsi14g1270	202	FunFam	Ethylene-responsive transcription factor 2	20	79	-	-
	Glsi14g1270	202	MobiDBLite	consensus disorder prediction	79	110	-	-
	Glsi14g1270	202	CDD	AP2	21	78	IPR001471	GO:0003700\|GO:0006355
	Glsi14g1270	202	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	14	137	-	-
	Glsi14g1270	202	MobiDBLite	consensus disorder prediction	81	100	-	-
	Glsi14g1270	202	SUPERFAMILY	DNA-binding domain	21	79	IPR016177	GO:0003677
	Glsi14g1270	202	ProSiteProfiles	AP2/ERF domain profile.	21	78	IPR001471	GO:0003700\|GO:0006355
	Glsi14g1270	202	Pfam	AP2 domain	21	71	IPR001471	GO:0003700\|GO:0006355
	Glsi14g1270	202	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355
	Glsi14g1270	202	PRINTS	Ethylene responsive element binding protein signature	44	60	IPR001471	GO:0003700\|GO:0006355
	Glsi14g1270	202	SMART	rav1_2	21	84	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi14g1270	Glsi-ChrGlsi14	13717364	13717972	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi14g1270	18	200	AP2-EREBP Transcription Factor Family	AT5G44210	45.989	5.06e-42	139

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi14g1270		AP2	2.1e-16	CL0081