Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1227 ATGAACATCGACCGCTGTGTGAAACTTGTTGTGCCTGTTTTCATGCAATTTACTTTTGCAAACCCAGATGACAAGGAAGAAAATGCTGCCATTTCATCATTAACAGCCATTTCATCATTAACAGCACAGGCCTTGCCTTTTTCTTCTGATGGAAATTATTACCGAAAGGAGCAGAACAAGCTTCACCTCCGGGTTTTGTCACCTAAACCCTGCAAATTAGCCATGGAAACTTTTGATTGGAGTTCAGGCATCCATGGAAATGCCCCAGAGAGAATTACTAATGGTTTTCTAGTTGACTCTGCCGTTATAGGAGGAATTGGGTTTGATTCATCTTCGTCTCTGGTTTTGGATAGTCAGATAGCAGAGCTCGTGGAGGCCCCTGTCAAAGAATGCAGCCAGGATGTGTCCACTGAGAGAAGCATTACTGCTTTGAAGAACCATAGCGAGGCAGAGCGGAGGAGAAGAGCAAGGATTAATGCACATCTTGATACGCTTCGCACTGTAATTCCAGGTGCTAAGAAGATGGACAAAGCGTCATTGCTAGCTGAGGTTATCAAACATTTGAAAGAGCTAAAAGGGAATGCAGCAGAAGCTTGTGAAGGATTAATGGTACCCAAGGACAACGATGAAATAAGAGTTGAAGAACAAGAGGGTGGGTCTAATGGTTTCCCTTATTCAATTAGGGCATCTCTGTGTTGTGAATATAAACCCGGGATATTGTCTGGTATAAGACAAGCACTTGATGCCCTTCATCTTGTGATAATGAGAGCGGAAATTGCAACCTTGGGAGGCAGGATGAAGAATGTGTTTGTTATAATTAGCTGCAAAGAACAAAGCATTGAAGATGCTTCATATCGCCAGTTTCTTGCTGGCTCTGTTCATCAAGCTCTTAGGTCTGTACTTGATAGGTTTTCTGCTCCACAGGACCTCTCAGGAATCAGAAAGAGACGGAGGATTTCTATATTCAGTTCATCATCATCTTTAGGAGATTTCTGTTCTGATAAGATATTCCGCAAATCTAAGGAGCTGGTGAGGAAGATGTATGGACCCATGATGAAGAACAATGCCACGTTTTGA 1077 0.4271 MNIDRCVKLVVPVFMQFTFANPDDKEENAAISSLTAISSLTAQALPFSSDGNYYRKEQNKLHLRVLSPKPCKLAMETFDWSSGIHGNAPERITNGFLVDSAVIGGIGFDSSSSLVLDSQIAELVEAPVKECSQDVSTERSITALKNHSEAERRRRARINAHLDTLRTVIPGAKKMDKASLLAEVIKHLKELKGNAAEACEGLMVPKDNDEIRVEEQEGGSNGFPYSIRASLCCEYKPGILSGIRQALDALHLVIMRAEIATLGGRMKNVFVIISCKEQSIEDASYRQFLAGSVHQALRSVLDRFSAPQDLSGIRKRRRISIFSSSSSLGDFCSDKIFRKSKELVRKMYGPMMKNNATF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1227 358 SMART finulus 148 197 IPR011598 GO:0046983
Glsi14g1227 358 Pfam Helix-loop-helix DNA-binding domain 146 191 IPR011598 GO:0046983
Glsi14g1227 358 Gene3D - 137 199 IPR036638 GO:0046983
Glsi14g1227 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Glsi14g1227 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 194 IPR036638 GO:0046983
Glsi14g1227 358 PANTHER TRANSCRIPTION FACTOR BHLH30 111 324 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1227 Glsi-ChrGlsi14 13311313 13313686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1227 129 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.306 1.15e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi14g1227 HLH 1.8e-11 No_clan