Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1225 ATGTCGCAAACTGGCAAGTCCGTGCAAGACCGTGCATTTGATTCTATTACTACCCGATTCCGCGATTCGCTGAGTTGCCAAGAGAACAAGCCCGATTTCAAAGAACTCGATCTGGGTTCTCCCTTTTCACCATTGAAAATCCGCGGCGCAGTTAATGATGGCAGCGGTGATGGAGCTGCCAACACTTCAAGCTCCAGTTCGAGTTCCTCTGGCTCGGTTGCAGGCAGAAGCAATGCTCCCGAGTTGCCCAGAAGACCAGATGGAAAACCAAACAACCATTCTGGCGAGCTCACTGGCTACTTCGGGACCAGCCCAAATGCCGCCGAGAGCTTCCGATCCGCTGCAACAATGCGCAATTCCAAGCCGGGTCATCGGAGATCGGTTTCCGCCGGAGCCCCATTAATATACTCCGGCAGAAATTCTAGCAGTACGGGCAATAGTGTTTGCTCCAACGGGGCAACTTCGGGGACTAATTTGTTCCCAACTGGTAATATTTGCCCGACGGGGAAGATCCTCAAATCCGTTTTGGTGTCTCGAGCTTCCAATAATAGAACCGACGTGTTGGGTTCGGGGACAGTGAACCATGGCCATGGTAGCATAATGCGTGGTGGCACAAAATTGAGCAATGCTGGGCACGTCGTTGATGACAATGTGGCTTGGAATTCTCAGCTTGGAGGAGTATCAGGATTTGTTAAGCGGGCAATGGCTGGTTCTGATCCAGAGGAAGTGAAAAAGACTGGAAATGATTTATATAGAACCGGTAACTTTGTGGAGGCATTGTCATTGTATGATCGTGCTATTTCGATATCACCGAACAACGCGGCTTACCGTAGTAATCGTGCGGCGGCGTTGACGGCATTGGGGAGGTTGGCTGAGGCAGCGAGGGAGTGCGAAGAGGCTGTGAAATTGGAACCTGGTTATGTCAGGGCGCATCAAAGGCTGGCTTCTCTTTGTCTGCGCTTTGGGCAGGTGGAAAATGCCAAGCGCCACCTCTGTCTCCCCGGGCAACAGGTGGATCAATGTGAACTGCAGAAGCTGAGGTTATTGGAGAAACATCTAAACCAATGTGCAGAGGCAAGAAAGTTTGGTGATTGGAAGAGTGCACTTAGGGAAGCAGAAGCAGCCATTGCAGTTGGAGCAGATTTCTCACCTCAGCTTGTTGCTTGTAAAGCAGAAGCTTATTTAAAATTCCATCAACTTGAGGATGCTGAATCCAGCCTCTCAAACATTCCCAAGTTGGAACGTTGTCCTCCATCTTGCTCTCAAACTAAGTTCTTTGGAATGGTTGGTGTAGCCTACGTACCCTTTGTGTGCGCACAGGTTGAGATGGCCTTAGGAAGGTTTGAGAATGCAGTAGCAGCAGCAGAAAAGGCTAGCCTGCTAGATTACTGTAATGCAGAAATTGGCAGGGTTCTAAATACTGTGAAAATGGTGGCAAGAGCTCGTTCCCAGGGCAATGATCTGTTTAGCTCTGGAAAATTTTCTGAAGCTTGTTCTGCTTATGGGGAAGGCCTCAAATATGACATTTCCAACTATGTTCTATATTGTAATAGAGCTGTTTGTTGGTCTAAACTTGGACTATGGGAAAAATCTGTTGAGGATTGCAACCAAGCTCTCAACATTCAACCAAATTACTCCAAGGCTCTTTTCCGCAGGGCTGCGTCAAATGCAAAGCTCGAAAGGTGGGCAGAAGTTGTGAAAGATTATGAGGCCTTAAAACAAGAACTTCCTGGAGACAATGAAGTTATTGATTCCCTTTGTCAGGCTCAACTAGCATTGGAAAAATCTCGCGGATTGGTCTATGCCAGGAAGCTTGAAGTTGAAGTTGAAGCAGTCTCTACATTGGATGAATTAAAAGCTGCAATTGCTTCTGCTGGTATTTCAGTAGTTCATTTCAAAGAAGCATCAAATGAACTATGTGAAGAAATATCGCCCTTCATAAATATGCTGTGTGTTAGATACCCATCTGTTAAATTCATCAAGGTGGACGTGGAGGAGTGTCTAGCTATAGCAAAAGCTGAGAGCATAAGAACTGTCCCAACTTTCAAAATTTACAAAAATGGAAAGAAGGTGAAGGAGATGATTCGGCCAACACATCAGTTCTTAGAGGAGTCAGTGAGAAACTATAGCTTCTCTAGATTCTAG 2145 0.4667 MSQTGKSVQDRAFDSITTRFRDSLSCQENKPDFKELDLGSPFSPLKIRGAVNDGSGDGAANTSSSSSSSSGSVAGRSNAPELPRRPDGKPNNHSGELTGYFGTSPNAAESFRSAATMRNSKPGHRRSVSAGAPLIYSGRNSSSTGNSVCSNGATSGTNLFPTGNICPTGKILKSVLVSRASNNRTDVLGSGTVNHGHGSIMRGGTKLSNAGHVVDDNVAWNSQLGGVSGFVKRAMAGSDPEEVKKTGNDLYRTGNFVEALSLYDRAISISPNNAAYRSNRAAALTALGRLAEAARECEEAVKLEPGYVRAHQRLASLCLRFGQVENAKRHLCLPGQQVDQCELQKLRLLEKHLNQCAEARKFGDWKSALREAEAAIAVGADFSPQLVACKAEAYLKFHQLEDAESSLSNIPKLERCPPSCSQTKFFGMVGVAYVPFVCAQVEMALGRFENAVAAAEKASLLDYCNAEIGRVLNTVKMVARARSQGNDLFSSGKFSEACSAYGEGLKYDISNYVLYCNRAVCWSKLGLWEKSVEDCNQALNIQPNYSKALFRRAASNAKLERWAEVVKDYEALKQELPGDNEVIDSLCQAQLALEKSRGLVYARKLEVEVEAVSTLDELKAAIASAGISVVHFKEASNELCEEISPFINMLCVRYPSVKFIKVDVEECLAIAKAESIRTVPTFKIYKNGKKVKEMIRPTHQFLEESVRNYSFSRF 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1225 714 Gene3D Glutaredoxin 601 711 - -
Glsi14g1225 714 SMART tpr_5 478 511 IPR019734 GO:0005515
Glsi14g1225 714 SMART tpr_5 512 545 IPR019734 GO:0005515
Glsi14g1225 714 SMART tpr_5 274 307 IPR019734 GO:0005515
Glsi14g1225 714 SMART tpr_5 546 579 IPR019734 GO:0005515
Glsi14g1225 714 SMART tpr_5 240 273 IPR019734 GO:0005515
Glsi14g1225 714 SUPERFAMILY TPR-like 477 589 IPR011990 GO:0005515
Glsi14g1225 714 SUPERFAMILY TPR-like 350 470 IPR011990 GO:0005515
Glsi14g1225 714 ProSiteProfiles TPR repeat profile. 240 273 IPR019734 GO:0005515
Glsi14g1225 714 Pfam Thioredoxin 616 696 IPR013766 -
Glsi14g1225 714 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 707 IPR044534 -
Glsi14g1225 714 MobiDBLite consensus disorder prediction 56 76 - -
Glsi14g1225 714 MobiDBLite consensus disorder prediction 1 24 - -
Glsi14g1225 714 SUPERFAMILY Thioredoxin-like 535 708 IPR036249 -
Glsi14g1225 714 SUPERFAMILY TPR-like 241 330 IPR011990 GO:0005515
Glsi14g1225 714 MobiDBLite consensus disorder prediction 96 123 - -
Glsi14g1225 714 CDD TRX_family 616 703 - -
Glsi14g1225 714 FunFam TPR repeat-containing thioredoxin TTL4 604 710 - -
Glsi14g1225 714 Pfam Tetratricopeptide repeat 247 306 - -
Glsi14g1225 714 MobiDBLite consensus disorder prediction 1 146 - -
Glsi14g1225 714 Gene3D Tetratricopeptide repeat domain 238 598 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1225 Glsi-ChrGlsi14 13303613 13306749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1225 235 331 U-box Gene Family AT3G07370 28.866 2.23e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1248 04 12790390 12793449 Glsi14g1225 14 13303613 13306749 CCT
Glsi14g1225 14 13303613 13306749 Glsi14g1225 14 13303613 13306749 ECH