Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1198 ATGAATCGCAGTAGCTCTCAAAGCAGTTCTTCATTTCGGAGGACCTGGAAATACGAAGTGTTTCTAAGTTTCAGGGGCGAGGACACTCGCAACAATTTCACCGGTCATCTTTTTTCTGCTCTTCAAAGAAAAGGTATTTTTACCTTCAGGGATGACAAAAGGCTCAAGAAAGGGGATTCCATTTCCCCAGAGCTTCTAAAAGCAATTGAGCAATCCCGGATTTCTATTGTTGTATTCTCAAAAAATTATGCCAATTCAACGTGGTGCTTGGAGGAACTGGCAAAGATCTCTGAGGGAATTAATGAGCCCGGATACACCATTCTACCTATTTTCTACCATGTCGATGCATCTGAGGTTCGAAAACAGAGTGAGAATTATGAAAGAGCGTTTTCCCAACATGAAGAAAGATTCAAAGATAATTTGGAGAAGGTAAACAGATGGAGGCAAGCTATGACACATGTAGCCAGTCTCTCTGGTTGGGATGTACAAAATAAATCAGAGTCAGAAGTTATTGATGCAATAGTTAGAGAAGCAATTGGAAAATTGGGACATAAATTCTCGAGTCTTGCTGATGATCTAGTTGGGATGCAATCTCGTGTAGAAGCATTAGAAAACCTTCTAGATTTAGAGTCCAATAATCATGTTCGAGTTGTTGGGATCTGGGGCATGGGTGGAATAGGAAAAACGACTCTTGCTGCAGTGGTTTATGACCGGATCTCTCACCGATTTGATGCTTCTTGTTTCCTTGCCGATGTTAGCAAAGTTGTTTCCGAGCGTTCTAGTCTTGTCCGTCTACAAAAACAACTACTTTGTGAAACTCTGGAAGAAAACCTAAAGATATGGGACGACCACAAAGGAACCAATTTAATAAGCACTAGACTTCGTCACCTTAAAACTCTTATTGTTATTGATAATGTTGATCATTCAGAGCAATTAGAGAAATTGGCTGGAGAATCCGGATGGTTTGGTGATGGGAGTAGGATCATCATAACAACTAGAGATGAGCATATCCTAAAAGAGCATGGAGTAAAAGAAGTTTACAAGGCTGAAATATTGAATGATAATGAAGCTCTTCAACTTCTTTGTAGAAAAGCCTTCAAAAGTGATGACCCCTTGGGCAATTTTCAAGAGATGTCTCAAAGTGTACTAGAATATGCCAAAGCCCTTCCATTAGTAATTAAAGTACTGGGTTCGTCTCTGTCTAACAAAACTGAAAAAGAGTGGGATAGTGCCTTGGCTACGTTGAAAAAAAATCCTAACAAAGAGGTTATGGGAGTGCTTGAAACAAGTTTTAAACATGTGGAGGAAGTGGTGAAGGAAATATTTATAGATATTGCTTGTTTTTTTAAGGGGGCTGAAGAGAACTATGCCATGGAAATTCTAGGCCATTGCGGATTCGAGCCTGTGATAGGAATTAGAAATCTGCTTGATAAATCACTCATAAGCATTGTTAATGGAACATTCTGGATGCATGATATGCTGCAAGAACTGGGATGGAAATTTGCTAGGCGAAACTTTCCTGCAGAGCCTGCAAAATGGAGTAGACTGTGGCTTTACAAGGATCTTCAAGTTATAAACACAGGAACGGAAAATGTTGAAGCCATAGTCTTGAACCAGGAAGATCTGCAAGAGACTCCATTGAAGGCTGAAGCTTTATCACAAATGAGCCGCCTTAGACTGCTCATATTTCCTAATGTAAAATTTTCAGGAAACCTCGATAATCTCTCCAATTACTTGCGACTTCTTTCATGGCATAAATATCCTTTCACCTACTTGCCATCAACTTTTGAGCCGAATGGACTTGTTGAATTGAATATGCCTGATAGCAACATGAGGCAATTATGGGAAGGCATAAAGACTCTCCCCAAGTTGACAAGCATAAATCTTCGTGGCTCCAAAAATCTAATCAAGACGCCAAATTTAAGTGGGGTAGCAAATCTTGAACGGCTAGACCTTGAAGGATGTACTGGATTGCTGCAGGTTGATCCATCTATTGGAGTTCTTGCAAAGCTTAAATTCCTGAATTTGAGAAACTGCGAACATTTAATCAGTATCCCAAACAGCTTATTTGTTTTAAGTTCTCTTGAAACTCTAAATTTCTCAGGCTGCTCAAAACTAGCGAAACGGTTAAATTTTGAAGGACCTCGATAG 2151 0.397 MNRSSSQSSSSFRRTWKYEVFLSFRGEDTRNNFTGHLFSALQRKGIFTFRDDKRLKKGDSISPELLKAIEQSRISIVVFSKNYANSTWCLEELAKISEGINEPGYTILPIFYHVDASEVRKQSENYERAFSQHEERFKDNLEKVNRWRQAMTHVASLSGWDVQNKSESEVIDAIVREAIGKLGHKFSSLADDLVGMQSRVEALENLLDLESNNHVRVVGIWGMGGIGKTTLAAVVYDRISHRFDASCFLADVSKVVSERSSLVRLQKQLLCETLEENLKIWDDHKGTNLISTRLRHLKTLIVIDNVDHSEQLEKLAGESGWFGDGSRIIITTRDEHILKEHGVKEVYKAEILNDNEALQLLCRKAFKSDDPLGNFQEMSQSVLEYAKALPLVIKVLGSSLSNKTEKEWDSALATLKKNPNKEVMGVLETSFKHVEEVVKEIFIDIACFFKGAEENYAMEILGHCGFEPVIGIRNLLDKSLISIVNGTFWMHDMLQELGWKFARRNFPAEPAKWSRLWLYKDLQVINTGTENVEAIVLNQEDLQETPLKAEALSQMSRLRLLIFPNVKFSGNLDNLSNYLRLLSWHKYPFTYLPSTFEPNGLVELNMPDSNMRQLWEGIKTLPKLTSINLRGSKNLIKTPNLSGVANLERLDLEGCTGLLQVDPSIGVLAKLKFLNLRNCEHLISIPNSLFVLSSLETLNFSGCSKLAKRLNFEGPR 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1198 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 445 IPR027417 -
Glsi14g1198 716 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Glsi14g1198 716 Pfam TIR domain 17 188 IPR000157 GO:0007165
Glsi14g1198 716 Gene3D - 351 435 IPR042197 -
Glsi14g1198 716 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 183 - -
Glsi14g1198 716 SMART till_3 17 157 IPR000157 GO:0007165
Glsi14g1198 716 Coils Coil 116 136 - -
Glsi14g1198 716 Gene3D - 11 186 IPR035897 -
Glsi14g1198 716 Gene3D Ribonuclease Inhibitor 520 712 IPR032675 -
Glsi14g1198 716 PRINTS Disease resistance protein signature 217 232 - -
Glsi14g1198 716 PRINTS Disease resistance protein signature 293 307 - -
Glsi14g1198 716 PRINTS Disease resistance protein signature 386 400 - -
Glsi14g1198 716 PRINTS Disease resistance protein signature 690 706 - -
Glsi14g1198 716 Gene3D - 187 346 IPR027417 -
Glsi14g1198 716 SUPERFAMILY "Winged helix" DNA-binding domain 422 522 IPR036390 -
Glsi14g1198 716 ProSiteProfiles TIR domain profile. 16 182 IPR000157 GO:0007165
Glsi14g1198 716 SUPERFAMILY L domain-like 541 705 - -
Glsi14g1198 716 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 709 IPR044974 GO:0006952
Glsi14g1198 716 Pfam Leucine Rich Repeat 601 619 IPR011713 -
Glsi14g1198 716 Pfam NB-ARC domain 198 439 IPR002182 GO:0043531
Glsi14g1198 716 Coils Coil 193 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1198 Glsi-ChrGlsi14 13093482 13096527 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1198 12 707 WRKY Transcription Factor Family AT4G12020 32.033 7.65e-92 312