Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1183 ATGGGAAACAAAAGTAACATGTTTCGTTATGCAGATGGGGTGGACAAGTTGTTGATGTTCTTAGGGACGCTGGGTAGCCTTGGAGATGGGCTGCAAAACCCTCTCATGATGTACATTCTTAGCGACGTCATCAACGCCTATGGAGACACCAATAGCATTTTGACAAAGCAAGATGTAAACAAGTATGCACTAAGGCTTTTCTATGCTGCAATTGGAGTTGGGTTCTCAGCTTTTGTTGAAGGAATATGTTGGACAAGAACTGCCGAGAGACAGACTTCCAGAATGAGAATGGAATACCTAAAATCAGTCCTTCGACAAGAAGTTGGTTTCTTTGACACCCAGACTGCTGGTTCTTCAACAACCTACCAAGTTGTCTCACTCATTACTGCTGATGCCAATGCAATCCAAGTTGCTTTGTGTGAAAAGATACCCGACTGCCTGGCTTACATGTCGACCTTTTTATTCTGCCACATCTTTGCATTTGTATTATCATGGAGACTTACATTGGCAGCGATCCCACTCTCAGTCATGTTCATCGTTCCGGCACTTGTATTCGGGAAGATCATGTTGGATCTAGTAATGAAAATGATCGAATCTTATGGGGTTGCTGGTGGGATTGCAGAACAAGCAATATCTTCAATAAGAACCGTTTATTCTTACGTAGGGGAGAATGAAACACTAAAAAGATTTAGCAGTGCACTTGAAAAAACTATGGAATTAGGAATAAAGCAAGGTTTTGCAAAGGGGCTGATGCTAGGAAGCATGGGAGTTATATATGTAAGTTGGGGTTTTCAGGCTTGGGTTGGAACTTTTTTAATTACTGAAAAAGGAGAACAGGGTGGCCATGTGTTTGTAGCCGGCTTCAACGTCCTCATGGGAGGGCTGAGTATTTTAAGTGCGCTTCCAAATTTAACTGCAATCACAGAGGCAACTGCTGCTGTCATCCGTCTATTTGAAATGATTGATCGGGTACCAACTATTGATTCCGAAGACAGAAAAGGAAAAGCTTTATCATTTGTGAGAGGAGAAATTGAGTTTCGAGACATCTATTTCTGTTACCCTTCAAGGCCAGATACACCTGTCTTACAAGGACTCAATCTCACAATTCCAGCAGGCAAGAGAGTAGGTCTTGTGGGGGCTAGCGGTTCGGGCAAGTCCACTGTCATTGCATTGCTTGAGAGATTTTATGACCCTGTTGAGGGAGAAATACTCTTGGAGGGCCACAACATTAGTAGACTTCAGTTGAAATGGCTGAGATCTCAACTTGGGCTAGTAAATCAAGAGCCCGTTCTTTTTGCCACATCCATAAAAGAGAATATATTGTTTGGAAAAGAAGGGGCTTCAATGGAAAGTGTGATAACTGCAGCTAAAGCAGCAAATGCTCACGATTTCATTGTCAAGTTACCAGATGGATATGAAACCCAAGTTGGGCAGTTTGGCTTTCAATTGTCTGGTGGGCAAAGGCAGCGAATTGCCATAGCAAGAGCTTTACTTCGGGATCCAAAGGTTCTGCTGCTTGATGAAGCTACAAGTGCACTGGATGCACAATCTGAGAAAGTGGTACAGGCGGCAATTGATCAGGCTTCAAGAGGAAGGACTACAATCATCATTGCTCACCGTCTTTCTACAATACAAACTGCCCACATTATTGCAGTTCTTCAAGCAGGAAGAGTTATTGAATCAGGTACTCATAATGAGCTCATGGAAATGAACGATGGAGAAGGGGGGGAATATGCCCGGATGGTATTGTTGCAGCAAGTAACAACACAGAATGAAGATTCCAAAACTTCCAATCCTCAAATAGGTGGAAGGAATGTCCACAGGATGAGCATTCCATCGAGTCCAGTAAGTATCAGTATCAGATCAAGCACGCAAGGCACTCCAATGTCATATCCCTTTAGCCAGGCATTTTCCATGGGCACGCCCTACTCTTACTCAATCCAATATGACCCTGATGATGATAGTTATGAAGATAACATGAAAAGATCAGTTTATCCAGCTCCTTCCCAGTGGCGTTTGCTGAAAATGAATGCACCTGAGTGGGTAAGAGCAGTGCTTGGATGCTTGGGCGCAATAGGCTCAGGAGCAGTCCAACCCGTGAATGCATACTACGTGGGAACACTTATTTCAGTTTACTTTGAGACTGAAACCTCTAAGGTCAAGTCTAGAACTAGAGTCTTGGCCCTCATTTTCTTAGCGATTGGTGTTTTTAACTTCTTTACGAGTATTCTCCAACACTATAATTTCGCAGTTATGGGAGAAAGATTGACTAAAAGAGTACGAGAAAAACTACTAGGAAAGTTGATGACTTTTGAGATAGGGTGGTTTGATAATGAAGAGAACACAAGTGCAGCCATTTGTGCAAGATTAGCCTCTGAAGCTAACATGGTTCGCTCCCTTGTTGGGGATCGGATGTCATTGTTGGCCCAAGCAGTTTTTGGGTCTATCTTTGCTTATGCTCTTGGGCTGGTGCTTACATGGAGGCTATCCCTTGTGATGATTGCAGTGCAGCCATTAGTCATTGGAAGCTTTTATGCAAGAAGTGTCTTGATGAAGAGTTTGGCAGAAAAAGCCCGAAAAGCGCAGAAGGAAGGAAGCCAACTTGCAAGTGAGGCAGTAATAAACCATAGAACCATAACTGCCTTCTGTTCTCAGAAAAGAATGTTAGCACTTTTCAAATCTACGATGGTAGGTCCTAAAAAGGAGAGTGTTAGGCAGTCATGGATTTCAGGCTTCGGTCTTTTCAGCTCCCAGTTTTTCAACACTGCATCAACAGCCTTAGCTTACTGGTATGGTGGGAGGCTGTTGATAGAGGGGCTCATAGAACCAAAGCATCTTTTCCAAGCATTTTTGATATTGCTTTTCACTGCATATATTATTGCAGAAGCTGGAAGCATGACTTCTGATTTATCTAAAGGAAGCAGCGCAGTTCGATCAGTGTTTGCTATCTTGGACAGGAATAGCGAGATTGATCCTGAGAGCACATGGGAACTGGACAAAAAAAAGAAAATAAGGGGCCGAGTGGAACTTAAAAGTGTTTTCTTTGCATATCCTACTAGACCTGAGCAGATGATATTCAAGGGTCTTTGTCTTAAGGTGGAGGCTGGGAGAACAGTGGCATTAGTGGGACAAAGTGGTTGTGGTAAGTCAACAATTATTGGTCTTATTGAGAGGTTTTATGAACCCGTGAAGGGAACAGTATGCATAGATGAACAGGATATCAGATCCTATAATTTGAGAGTGCTAAGGTCACATATTGCCCTAGTAAGTCAGGAGCCAACCCTTTTTGCTGGAACCATTCGAGAGAACATTGCCTATGGGAAAGAAAAGGCCACTGAAACTGAGATAAGAAAGGCTGCAACTCTGGCTAATGCTCATGAATTTATAAGTGGTATGAAAGATGGGTATGATACATACTGCGGAGAAAGAGGAGTTCAACTGTCGGGAGGTCAGAAACAAAGGGTAGCCTTAGCTCGTGCAATACTGAAGAATCCTGCAATTCTGCTTCTGGACGAGGCTACCAGTGCACTTGACAGTGTGTCAGAGAACTTAGTTCAAGAAGCACTTGAGAAGATGATGGTTGGCAGAACGTGCATAGTTGTGGCTCACAGGCTATCTACAATACAGAAATCCAACTCCATTGCTGTGATTAAGAATGGGAAAGTTGTGGAACAAGGTTCACATAATGAATTAATTTCCCTAGGACGAGATGGAGCATACTTTTCTCTCATTAGACTCCAAAGTGGTAGATCTCCTCGAAGGTAA 3765 0.43 MGNKSNMFRYADGVDKLLMFLGTLGSLGDGLQNPLMMYILSDVINAYGDTNSILTKQDVNKYALRLFYAAIGVGFSAFVEGICWTRTAERQTSRMRMEYLKSVLRQEVGFFDTQTAGSSTTYQVVSLITADANAIQVALCEKIPDCLAYMSTFLFCHIFAFVLSWRLTLAAIPLSVMFIVPALVFGKIMLDLVMKMIESYGVAGGIAEQAISSIRTVYSYVGENETLKRFSSALEKTMELGIKQGFAKGLMLGSMGVIYVSWGFQAWVGTFLITEKGEQGGHVFVAGFNVLMGGLSILSALPNLTAITEATAAVIRLFEMIDRVPTIDSEDRKGKALSFVRGEIEFRDIYFCYPSRPDTPVLQGLNLTIPAGKRVGLVGASGSGKSTVIALLERFYDPVEGEILLEGHNISRLQLKWLRSQLGLVNQEPVLFATSIKENILFGKEGASMESVITAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQRQRIAIARALLRDPKVLLLDEATSALDAQSEKVVQAAIDQASRGRTTIIIAHRLSTIQTAHIIAVLQAGRVIESGTHNELMEMNDGEGGEYARMVLLQQVTTQNEDSKTSNPQIGGRNVHRMSIPSSPVSISIRSSTQGTPMSYPFSQAFSMGTPYSYSIQYDPDDDSYEDNMKRSVYPAPSQWRLLKMNAPEWVRAVLGCLGAIGSGAVQPVNAYYVGTLISVYFETETSKVKSRTRVLALIFLAIGVFNFFTSILQHYNFAVMGERLTKRVREKLLGKLMTFEIGWFDNEENTSAAICARLASEANMVRSLVGDRMSLLAQAVFGSIFAYALGLVLTWRLSLVMIAVQPLVIGSFYARSVLMKSLAEKARKAQKEGSQLASEAVINHRTITAFCSQKRMLALFKSTMVGPKKESVRQSWISGFGLFSSQFFNTASTALAYWYGGRLLIEGLIEPKHLFQAFLILLFTAYIIAEAGSMTSDLSKGSSAVRSVFAILDRNSEIDPESTWELDKKKKIRGRVELKSVFFAYPTRPEQMIFKGLCLKVEAGRTVALVGQSGCGKSTIIGLIERFYEPVKGTVCIDEQDIRSYNLRVLRSHIALVSQEPTLFAGTIRENIAYGKEKATETEIRKAATLANAHEFISGMKDGYDTYCGERGVQLSGGQKQRVALARAILKNPAILLLDEATSALDSVSENLVQEALEKMMVGRTCIVVAHRLSTIQKSNSIAVIKNGKVVEQGSHNELISLGRDGAYFSLIRLQSGRSPRR 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1183 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 585 IPR027417 -
Glsi14g1183 1254 Gene3D ABC transporter type 1, transmembrane domain 645 996 IPR036640 GO:0005524|GO:0016020
Glsi14g1183 1254 Pfam ABC transporter transmembrane region 19 294 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi14g1183 1254 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi14g1183 1254 FunFam Putative ABC transporter B family member 8 647 995 - -
Glsi14g1183 1254 PANTHER ABC TRANSPORTER B FAMILY 6 742 IPR039421 -
Glsi14g1183 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Glsi14g1183 1254 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Glsi14g1183 1254 SUPERFAMILY ABC transporter transmembrane region 671 986 IPR036640 GO:0005524|GO:0016020
Glsi14g1183 1254 SMART AAA_5 371 563 IPR003593 GO:0016887
Glsi14g1183 1254 SMART AAA_5 1035 1227 IPR003593 GO:0016887
Glsi14g1183 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1247 IPR027417 -
Glsi14g1183 1254 CDD ABC_MTABC3_MDL1_MDL2 344 585 - -
Glsi14g1183 1254 Coils Coil 851 871 - -
Glsi14g1183 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Glsi14g1183 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi14g1183 1254 FunFam ABC transporter B family member 4 998 1251 - -
Glsi14g1183 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Glsi14g1183 1254 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524|GO:0016887
Glsi14g1183 1254 Gene3D - 998 1252 IPR027417 -
Glsi14g1183 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1244 IPR003439 GO:0005524
Glsi14g1183 1254 FunFam ABC transporter B family member 4 334 593 - -
Glsi14g1183 1254 CDD ABC_MTABC3_MDL1_MDL2 1008 1247 - -
Glsi14g1183 1254 SUPERFAMILY ABC transporter transmembrane region 7 328 IPR036640 GO:0005524|GO:0016020
Glsi14g1183 1254 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524|GO:0016887
Glsi14g1183 1254 FunFam ABC transporter B family member 15-like 7 339 - -
Glsi14g1183 1254 Gene3D ABC transporter type 1, transmembrane domain 6 593 IPR036640 GO:0005524|GO:0016020
Glsi14g1183 1254 Gene3D - 334 586 IPR027417 -
Glsi14g1183 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi14g1183 1254 Pfam ABC transporter 362 511 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1183 Glsi-ChrGlsi14 12971521 12978055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1183 7 1247 Calmodulin-binding Proteins AT2G36910 44.151 0.0 1009