Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1176 ATGCCATCACCACTTGCCAGTTATCACAAATTTTCCATTTTCCTCATCCCTCAGTCTCCCGGGTTGCCTTTTCGCAGAAAAAGACCTCTCTTTTTTTCCATCTCCTCAAACTTGCAACCGCTCACTTGCTGTTTATTTCGTAGGAAAAGAGTACTCGCCGGAAATTCTAAATTTTCCGGGAACTTCCGCTGCAGAATGGTTGGCCCGGAAAACACCAATTGGCTTTTCGATTATGATCTAATTGATGATATTTCTGTACCAGATGAGAGCTTCACTGTACCCGCTTCCGGGTTCAGCTGGCCGGCGCAGCCGTTGAATGGTTCTTCGAATGTCAGTGTTGAACTTGATGGCTCCTTGGGAGATTCTGATGGTGTAAAAGAATCTGGTTCAAAGAAAAGGGGTAGGTCTGAATCATGTGCTGCTTCTAGCTCCAAGGCATGTCGGGAGAAGTTACGGAGGGATAGGCTGAATGACAAGTTTCTTGAATTAGGCTCCATTTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAAGCTGCTGTTCTGATTGATGCTGTCCGAATGGTGACACAATTACGAGGTGAAGCCCAGAAGTTGAAAGACTCAAATACGAGTCTTCAAGAGAAGATTAAAGAGTTGAAGGCTGAGAAGAATGAACTTCGTGATGAGAAGCAGAGGCTCAAGGCAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAAGCTATCAATGCTCAACCAGGTTTCATGCCTCCCCCTCCTGCTATCCCTGCTGCATTTGCTGCGCAAGGCCAAGCCCCTGGCAGTAAGTTGGTGCCTTTTATTGGTTATCCAGGGGTTGCCATGTGGCAATTTATGCCACCAGCTTCTGTGGATACGTCACAGGACCATGTACTCCGTCCACCAGTTGCCTAA 906 0.4724 MPSPLASYHKFSIFLIPQSPGLPFRRKRPLFFSISSNLQPLTCCLFRRKRVLAGNSKFSGNFRCRMVGPENTNWLFDYDLIDDISVPDESFTVPASGFSWPAQPLNGSSNVSVELDGSLGDSDGVKESGSKKRGRSESCAASSSKACREKLRRDRLNDKFLELGSILEPGRPPKTDKAAVLIDAVRMVTQLRGEAQKLKDSNTSLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQLKAINAQPGFMPPPPAIPAAFAAQGQAPGSKLVPFIGYPGVAMWQFMPPASVDTSQDHVLRPPVA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1176 301 SMART finulus 146 197 IPR011598 GO:0046983
Glsi14g1176 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 191 IPR011598 GO:0046983
Glsi14g1176 301 PANTHER BHLH TRANSCRIPTION FACTOR 69 301 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Glsi14g1176 301 Gene3D - 143 220 IPR036638 GO:0046983
Glsi14g1176 301 FunFam Transcription factor bHLH34 131 189 - -
Glsi14g1176 301 Coils Coil 188 243 - -
Glsi14g1176 301 MobiDBLite consensus disorder prediction 111 139 - -
Glsi14g1176 301 Pfam Helix-loop-helix DNA-binding domain 144 191 IPR011598 GO:0046983
Glsi14g1176 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 210 IPR036638 GO:0046983
Glsi14g1176 301 CDD bZIP 206 238 - -
Glsi14g1176 301 CDD bHLH_AtILR3_like 145 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1176 Glsi-ChrGlsi14 12923979 12926893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1176 66 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 75.314 1.05e-121 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi14g1176 HLH 3.9e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1176 14 12923979 12926893 Glsi14g1176 14 12923979 12926893 ECH