Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1171 ATGGCAATTCAACAATTTATGGGTGTCACAAAAGCTGGCTTCTTCGTTCTTTTGTGTCTTCTTTTTACACCAGCTAGTAGCTTAAAAGAAAGGGAGCAAACACAAGATGACTTCCTTAGCCTACTACTGGATCCGGCATCTGGATTGTTAGATGACGACACGGCAGAGCAATTATGGTCCACTTGCTGGGTAGATTGGATTCACTTAAAGGAAGAAGTAGAAGATCTTGACTTATGGTTTCCTCAAGAATCATCCAGTAGCACCGATGAAAATTCAGAAATTCAATCTTTAGTGCAAGAAAACATCCAAAAGTTGATTAATGCTCAACGTCCTCAGATAAAGAAATTTTTTCTCCACTGTTTGAGAAAGAATAATCTTCCATTCCGTGTCTCTGGAGAAGAAGATGACTCTACAGTTTGGCATGCCTCATTTTTGGAATCGCTTTTTTCCAGGTCCAGTGTTCCTAGAAGAAATTTGGGTCATGAACTGCCCCTACGCATATCAGAAGCACCTAGTCCGGGTCCTGCAGTTGTATCACCTACACCCAGTCTAGCACCATCACCTGCTCCAGCACCTTCCATCCCTCAAGTTCCTAAATCTGGGCATCCTGCTTCATCACCGAAACAGGCATTCTTCCCAAAGCTGCTTCCTCCAGCTGCTAAAGATGCCTCTGCAAATCCATCTTCTAATTCTGATATGCAGGCAGATCAGCAAAGTGGTCACAAAAGAACAGTTGTTCTTGCCGTAGTTATAACTGCATTAGTGACACTTGTAGTTGCAGCACTGCTCTTTTTATGCTATAGTAGGTTTTGTAGGACTGGTCGAGTTAGACAAAATGATGAGAGGCCCCTTCTCACCTTGAGCTTGAGCGACTACTCTGTTGGTTCTTCCAATTATACTATTGGAAATTCAATAAAAGAGGAGAAACTTGGGTTTCAGTCATCTAGCAATAACTTGGGTGACCACAAAAAGATATCTTCTCTGAATGCAAATTCTTATGTTGGCTCTGAAATTTTCCATGCCACAGTGCAGGAAAGTCAATGGATAGGAGCTGCTGCCACATCATCAATTGAACTGAAACCTCCTCCTGGGAGGGTGGGAACCATCACTTCTGGATTGCCTCCTTTAAAACCTCCTCCTGGGAGGGTGGGAACCATCACTTCTGGATTGCCTCCTTTAAAACCTCCTCCTGGGAGGGTGCGAACCATCACTTCTGGATTGCCTCCTTTAAAACCTCCTCCTGGAAGGCCAAGACCCCTTCCCCCTGAACCACCTTCTTTTAGACCTGCTGCTGCCGCTGCTCCTCCTCCTCCTCCTACTGCATCCTCACAATCTGTCAAACCTTATTCTGGTGATGGTGGCACTCCACCTCCTGGATCTCCTCCTCCACCATCACAACCTGGTGCCAAACTAGGTGGTCCTCCACCACCACCACCACCACCGGGTGCCAAAGCAGGTGGTCCTCCACCACCATCACCACCTGGTGCTAAACCAGGTGGTCCTCCACCACCACCACCCCCTAGTGCCAAAGCTGGTGGTCCTCCTCCACCACCTCCTCCTAAGAGTGGTATAGCTCCTCCTCGACCTCCTCCACCTATTGGCCCAAAGGTGGCTCGACCACAGAATGTGGGAGCAGGTTCAGAAGGTGAAGCTGGTGCTCCTAAACCCAAGCTAAAACCTTTTTTCTGGGATAAGGTTCAAGCCAACTCAGATCAATCGATGGTTTGGAATCAGATCAAATCGGGATCATTCCAGTTTAATGAAGAGATGATCGAGACACTTTTTGGCTATAGTGCTGTGGATAGAAACAAAGGTGAACAGAAGAAAGAGTCATCCTCCCAAGACCCTTCAACTCAGCATATCCAAATAATTGACACGAAGAAATCGCAAAATTTGTCAATTTTATTGCGAGCATTGAACGTGACAACGGAAGAAGTTTGTGATGCACTTCATGAGGGAAATGAGCTTCCCTCAGAATTTCTTCAAACCTTGCTGAAGATGACACCAACGTCAGAGGAAGAACTTAAGCTTAGACTTTTCAGTGGAGAAATATCTCAACTTGGGCCTGCAGACCGATTCTTAAAAGGCCTGGTTGACATTCCATTTGCTTTTAAACGATTGGAAGCATTGCTTTTCATGGGCACTTTTCAAGAGGAGCTCACTGCTACTAAGGAGTCCTTTGCAATTTTAGAGGTTGCTTGTAAGGAGCTAAGAAACAGTCGGCTGTTCCTCAAGCTTCTAGAAGCTGTTCTTAAAACTGGTAACCGTATGAATGATGGAACATTCCGTGGTGGTGCACAAGCATTTAAACTTGATACACTACTGAAATTGTCTGATGTAAAAGGAATAGACGGCAAGACTACGCTCTTACACTTTGTAGTCCAAGAGATAATCCGCTCTGAAGGCATAAGAGCTGCTCGTACGGCAAAAGAAAACCGTAGTTCCTCTGGTATTAAAACAGACGATGACCTTCTTGAGGACATCTCCCATGAAGAAGATGACTATCATGATCTTGGTCTTCAGGTGGTTTCACGTTTGAGCAGTGAACTCGAGAATGTCAAGAAAGCAGCAGCAATAGATGCTGACAGCTTAACAGGAACTACTGCAAAACTTGGCCATGGTCTCCTGAAAAGCAGAGACTTCATGAACACTGACTTGAAGAGCATAGAGGAAGATAGAGGGTTTTATCTGACGGTGAAGAGTTTTGTGCAGAATGCTGAGAGTAATGTCACGAGTCTGCTGGAAGAAGAGAAGAAAATTATGGCTCTGGTTAAGAGCACTGGCGACTATTTTCATGGGAATGCTGGAAGAGATGAGGGATTGCGCTTGTTTGTAATAGTACGGGACTTCTTAATAATGGTGGATAAGGTATGCAATGAGGTGAGACACGCACAGAAGAAGTCAGCAAAAACTCAGAAACACGCGAGGTCAAAAGCATCATCATCCTCCGATGTTCGTCAACCACCTTTTCCTGATTTTCGTCAGCAGCTATTTCCGGCAATTTCTGATAGGAATATCAACGACTTCAGTTCAGATGATGAGAGAACATAG 3051 0.4503 MAIQQFMGVTKAGFFVLLCLLFTPASSLKEREQTQDDFLSLLLDPASGLLDDDTAEQLWSTCWVDWIHLKEEVEDLDLWFPQESSSSTDENSEIQSLVQENIQKLINAQRPQIKKFFLHCLRKNNLPFRVSGEEDDSTVWHASFLESLFSRSSVPRRNLGHELPLRISEAPSPGPAVVSPTPSLAPSPAPAPSIPQVPKSGHPASSPKQAFFPKLLPPAAKDASANPSSNSDMQADQQSGHKRTVVLAVVITALVTLVVAALLFLCYSRFCRTGRVRQNDERPLLTLSLSDYSVGSSNYTIGNSIKEEKLGFQSSSNNLGDHKKISSLNANSYVGSEIFHATVQESQWIGAAATSSIELKPPPGRVGTITSGLPPLKPPPGRVGTITSGLPPLKPPPGRVRTITSGLPPLKPPPGRPRPLPPEPPSFRPAAAAAPPPPPTASSQSVKPYSGDGGTPPPGSPPPPSQPGAKLGGPPPPPPPPGAKAGGPPPPSPPGAKPGGPPPPPPPSAKAGGPPPPPPPKSGIAPPRPPPPIGPKVARPQNVGAGSEGEAGAPKPKLKPFFWDKVQANSDQSMVWNQIKSGSFQFNEEMIETLFGYSAVDRNKGEQKKESSSQDPSTQHIQIIDTKKSQNLSILLRALNVTTEEVCDALHEGNELPSEFLQTLLKMTPTSEEELKLRLFSGEISQLGPADRFLKGLVDIPFAFKRLEALLFMGTFQEELTATKESFAILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGIDGKTTLLHFVVQEIIRSEGIRAARTAKENRSSSGIKTDDDLLEDISHEEDDYHDLGLQVVSRLSSELENVKKAAAIDADSLTGTTAKLGHGLLKSRDFMNTDLKSIEEDRGFYLTVKSFVQNAESNVTSLLEEEKKIMALVKSTGDYFHGNAGRDEGLRLFVIVRDFLIMVDKVCNEVRHAQKKSAKTQKHARSKASSSSDVRQPPFPDFRQQLFPAISDRNINDFSSDDERT 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1171 1016 PANTHER FORMIN-RELATED 451 1012 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Glsi14g1171 1016 MobiDBLite consensus disorder prediction 165 208 - -
Glsi14g1171 1016 MobiDBLite consensus disorder prediction 175 197 - -
Glsi14g1171 1016 MobiDBLite consensus disorder prediction 407 443 - -
Glsi14g1171 1016 Pfam Formin Homology 2 Domain 551 954 IPR015425 -
Glsi14g1171 1016 MobiDBLite consensus disorder prediction 965 1016 - -
Glsi14g1171 1016 MobiDBLite consensus disorder prediction 357 558 - -
Glsi14g1171 1016 SUPERFAMILY Formin homology 2 domain (FH2 domain) 619 975 - -
Glsi14g1171 1016 MobiDBLite consensus disorder prediction 220 239 - -
Glsi14g1171 1016 ProSiteProfiles Formin homology-2 (FH2) domain profile. 548 980 IPR015425 -
Glsi14g1171 1016 MobiDBLite consensus disorder prediction 223 239 - -
Glsi14g1171 1016 Gene3D Formin, FH2 domain 553 987 IPR042201 -
Glsi14g1171 1016 SMART it6_source 548 969 IPR015425 -
Glsi14g1171 1016 MobiDBLite consensus disorder prediction 975 989 - -
Glsi14g1171 1016 MobiDBLite consensus disorder prediction 454 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1171 Glsi-ChrGlsi14 12895790 12903245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1171 3 332 FH2 protein (formin) Gene Family AT5G54650 31.940 1.06e-16 83.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1171 14 12895790 12903245 Glsi04g0928 04 7391620 7397588 CCT
Glsi14g1171 14 12895790 12903245 Glsi14g1171 14 12895790 12903245 ECH