Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1169 ATGCCAACGGTTTGGTTCTCTCTGAAGAGGTCTCTACACTGCAAATCAGAGCCATCAGACGTTCATGACCCAAAATCTAGAAAGCACTTGAGCACAATCTTGACGAAAAAAGCAGGACGGTCTGGCTGTTCCAGGAGTATAGCAAATCTCAAAGATGTCATCCATGGGAGCAAGAGGCATATGGAGAAGCCACCGAGTTGCAGCCCAAGATCCATTGGGAGCAGTGAGTTCCTCAACCCAATAACCCATGAAGTGATTTTAAGTAACTCGAGGTGTGAGCTCAAAATCACTGGCTTTGGAGGATTGCAAGAAGGGGTTGGCAGCGGCGGTGCTTGCGGTGGTAATAATGTTGGTGGTAGTGGTGGCTCAACTTTTGTGGGTACTTTAAGGCCTGGGACTCCGGGGCCCGGAGGGCACCCTACAATGCACTATTTCAACCCTTCTTTTAGGACTTCAACCACTCCTCCAAGGAAATCTCCTTTCCTTTTATCAGAAAAAGATGGGTCTGCTGCTTTGCATGGGGGTGGACTTCATTCAAGCAATAGGTTGTCTCTTGAGACGGATTCTAATGGCTGTTCTACTGTGACTTGTCACAAATGTGGAGAGCAATTTAGCAAATGGGAAGCGGCTGAATCTCATCATCTCTCGAAGCATGCTGTTACTGAACTTGTGGAGGGCGATTCATCAAGAAAAATAGTAGAGATAATATGCAGGACAAGCTGGTTAAAGTCTGAAAACCAGTGCGGCCGAATAGAGAGAGTCTTGAAAGTGCATAACATGCAAAAGACACTGGCTCGATTCGAAGAGTACAGGGAGATGGTGAAAATCAAGGCCAGCAAACTCCCCAAGAAGCATCCTCGGTGCCTGGCTGATGGGAATGAGCTGTTAAGGTTCTATGGCGCCACTATTGCCTGCTCACTCGGTCTCAATGGTTCTTCCAGTCTGTGTCTATCAGAAAAATGCTGTGTTTGTCGAATTATCAGGGATGGGTTTTCCGCAAAGAAGGAGCTCAAGGGTGGAATAGGCGTTTTCACAACTTCCACAAGTGGTAGAGCTTTTGAATCTATTGAGGTTTTTGATGATGACCCATCAATCAGAAAAGCACTGATAGTGTGCAGAGTAATAGCTGGCAGGGTCCATAGGCCTCTGGAGAACATTCAGGAAATGGCAGGGCAAACAGGTTTTGATTCATTGGCTGGGAAAGTAGGTCTTTATTCAAACATTGAAGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTAATTTGCAAGCCCTGA 1290 0.4628 MPTVWFSLKRSLHCKSEPSDVHDPKSRKHLSTILTKKAGRSGCSRSIANLKDVIHGSKRHMEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFGGLQEGVGSGGACGGNNVGGSGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSTTPPRKSPFLLSEKDGSAALHGGGLHSSNRLSLETDSNGCSTVTCHKCGEQFSKWEAAESHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLPKKHPRCLADGNELLRFYGATIACSLGLNGSSSLCLSEKCCVCRIIRDGFSAKKELKGGIGVFTTSTSGRAFESIEVFDDDPSIRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1169 429 Gene3D - 210 428 - -
Glsi14g1169 429 ProSitePatterns Zinc finger C2H2 type domain signature. 197 218 IPR013087 -
Glsi14g1169 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 427 - -
Glsi14g1169 429 FunFam C2H2-like zinc finger protein 219 428 - -
Glsi14g1169 429 SUPERFAMILY ADP-ribosylation 220 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1169 Glsi-ChrGlsi14 12887753 12889548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1169 1 429 C2H2 Transcription Factor Family AT5G54630 68.467 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi14g1169 None None None