Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1166 ATGAAAGAGGAGTCAATAGGACTGATTATTGGGATTTCAATAGGTGTGGTTATTGGAGTTGTTTTGGCTATTTCTGCACTGTTCTGTGTCAGATACCATAGGAAGCGCTCACAGATAGGCAATAGCAGTTCCCGGAGGGCAGCCACCATACCCATCCGTGCAAATGGGGCTGACTCTTGCACTATTCTATCAGACTCAACCATAGGTCCAGAGTCACCTGTAAAGTCTGGACGCAATGGCATGTCCTTCTGGTTTGATGGGTTTAAGAGAAGCAACATGGTTTCAGCATCTGGAATACCTGAGTATTCATACAAGGATCTGCAGAAGGCAACATATAATTTTACAACACTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAAATGTCCACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACCAATTCTAAGCAGGGGGAGAAAGAATTCCATACAGAGGTTATGTTGTTGGGAAGGTTGCACCATAGAAACCTGGTTAATTTGGTCGGATATTGCGCAGAGAAGGGGCAAAATATGCTTGTATATGTTTACATGAGTAAAGGCAGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGGGCAATAAGCTGGGATTTGAGGGTTCATATAGCTCTAGATGTTGCTAGAGGCTTGGAGTATCTCCATGATGGGGCAGTTCCACCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGACCAATCCATGAGAGCCAGAGTTGCTGATTTTGGGCTTTCAAGAGAAGAGATGGTGGACAAACATGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGCACATTCACTAAGAAAAGTGATGTGTACAGTTATGGGGTGTTGCTTTTTGAACTTATAGCTGGCAGAAATCCTCAGCAGGGCCTTATGGAATATGTTGAGCTTGCAGCAATGAACACCGAGGGAAAAGTGGGATGGGAGGAAATTGTGGATTCTGGCCTAGATGGGAAGTTTGATGTGCAAGAGCTGAATGAAGTGGCAGCCCTTGCACACAAATGCATCAATCGTGCCCCAAGAAAACGCCCTTCCATGAGAGACATAGTGCAGGTGCTGACGCGGATCCTTAAATCAAGACACAACAACAGGAATCGTCATAGGCAGGCCTTGTCTGCCACAGCAGATGAAGTTTGCATTGATGTTGATCAGTCAGAAACCAGGATTTCTGTTACTGAACACCGGAGAGAAGAATCTATAGATAGTGCAGCTGACACCTATGAAGTGTAA 1293 0.4455 MKEESIGLIIGISIGVVIGVVLAISALFCVRYHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTIGPESPVKSGRNGMSFWFDGFKRSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQNMLVYVYMSKGSLASHLYSEENGAISWDLRVHIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSYGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSGLDGKFDVQELNEVAALAHKCINRAPRKRPSMRDIVQVLTRILKSRHNNRNRHRQALSATADEVCIDVDQSETRISVTEHRREESIDSAADTYEV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1166 430 MobiDBLite consensus disorder prediction 411 430 - -
Glsi14g1166 430 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 397 - -
Glsi14g1166 430 Gene3D Transferase(Phosphotransferase) domain 1 188 402 - -
Glsi14g1166 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Glsi14g1166 430 Gene3D Phosphorylase Kinase; domain 1 86 187 - -
Glsi14g1166 430 CDD STKc_IRAK 118 377 - -
Glsi14g1166 430 Pfam Protein tyrosine and serine/threonine kinase 114 374 IPR001245 GO:0004672|GO:0006468
Glsi14g1166 430 ProSiteProfiles Protein kinase domain profile. 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g1166 430 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 187 - -
Glsi14g1166 430 SUPERFAMILY Protein kinase-like (PK-like) 101 396 IPR011009 -
Glsi14g1166 430 PANTHER OS01G0750732 PROTEIN 4 396 - -
Glsi14g1166 430 SMART serkin_6 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1166 Glsi-ChrGlsi14 12871015 12873952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1166 24 374 Glycoside Hydrolase AT3G07070 38.649 1.39e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Glsi14g1166 PK_Tyr_Ser-Thr 3.8e-53 CL0016