Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1154 ATGGGGGCGGGGCCCAGCACCAGCCTCTTTGTCACTGGTGCGTCTGCCTTTCCCTTTCCTCATTATCGCTCAACTCCTTTTATATTTGCTGGAGTCTTGTTACGGGTAATCGACATATTTCGAGTATGTTTATCCATCGCCATATCAGGGCTTAGCAAACATACCACTACAGAAAGGCTACGGAAAGCATTTTCCCAGTTTGGTGAAGTTGTTCGCGCTAGAGTGATGATAGATAGACTATCAGGTTGCTCTAAGGGATTTGGTTGTGTAAAATATGCTACTATAGGAGAGGCTGCAAAGGGCATTGAAGGCATGGATGGAAAGATTTGCGCACAGCTGTCCCAGAGTTTGCACCGAGTCTCATCTTTTATTGTTTCAACTGTTGTTTTCTCACGATTGTCTTTTACCTGCCTTTTCTGGGATTTCAATATGACATTGACTCACTCATTATTTCCTGATGGTGTTTGCTTCTTAGCTACCCTGAACTATAGTATTAGTTTGACATAG 507 0.4339 MGAGPSTSLFVTGASAFPFPHYRSTPFIFAGVLLRVIDIFRVCLSIAISGLSKHTTTERLRKAFSQFGEVVRARVMIDRLSGCSKGFGCVKYATIGEAAKGIEGMDGKICAQLSQSLHRVSSFIVSTVVFSRLSFTCLFWDFNMTLTHSLFPDGVCFLATLNYSISLT 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1154 168 SMART rrm1_1 45 114 IPR000504 GO:0003723
Glsi14g1154 168 PANTHER NUCLEOLAR PROTEIN 8 48 108 - -
Glsi14g1154 168 Gene3D - 41 119 IPR012677 -
Glsi14g1154 168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 108 IPR000504 GO:0003723
Glsi14g1154 168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 109 IPR000504 GO:0003723
Glsi14g1154 168 SUPERFAMILY RNA-binding domain, RBD 45 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1154 Glsi-ChrGlsi14 12545809 12547720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1154 44 109 Eukaryotic Initiation Factors Gene Family AT2G23350 36.364 1.94e-07 47.8