Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1113 ATGACAAAATCTCCTTACGGTGAAAAGAATGGATTGAAGAGAGGTCCATGGACTCCCGAAGAAGATCAGAAGCTCATCGATTATATTCAGAAACATGGACACGGCAAATGGCGAACCCTTCCAAAGAATGCAGGACTAAAAAGATGTGGAAAGAGTTGCCGTCTTCGCTGGACAAACTACTTGAGGCCGGATATAAAGAGAGGTAGATTCTCATACGAAGAAGAAGAAGCCATCATTCAGTTACACAGTGTTCTGGGAAACAAGTGGTCTACTATTGCTGCTAGCTTACCGGGAAGAACAGATAACGAGATCAAGAATTATTGGAATACCCATATCAAGAAGAGGCTGTTGAAGATGGGGATTGATCCAGTGACTCACGCACCATGCCTGGATCTTCAGCTACTCTCCTCCATTCTGAACTCATCTCCCTACAACTCCTCACCTCAACTTAACTATCCTGGTCTCTTTGGGATGGGAAGCATATTAAATCCAAGCCTTCTAAGCTTACTTGCATCTCTGTTATCATCACAAAACCCAAATGTTATAAATCAAAATTTCCAGCAAAACCAATGCCAATCTTCCCAATCCACGCAGCTTCACTCTATCCCAGCCTTGCATCCAAACCAACCCCAAGTCCCTGTTCAAGAAAACCAGTCTTGTGCAGCATCTATTAATCCTTCAACTTTGGAATACCAACTCTTGAAAGCAAAACTTGATCAAATCCCTCCAAGTAACACTAATTTTAGCCACCAAAATACCCTACCAAATCTGTGGCAGTATAATGGAGGTCATTTGGACGAACCTGCTATGCAAAGTTTTTCTTCACCCTGCAAGTTCAACTCCATGGTCAACAATCTTTTGGGAGATCAGATTCTACAGAACAACGTGGACATGCCAAATTTCAATCTAGGGTCACTGTTATCGTCTACAAATGCATCTACTAGCCCCAGTACGTTGAATTCATCGTCTTCCACTACATTTGTCAACGGTGCCCGTGTCACTGAAGATGAAAGTGACACTTACTGCAGCAACATGTTGATGTATAATATCTCAAGTGGCTTAAATATTATTAATGACTCTAGACTTTTGTGA 1092 0.4194 MTKSPYGEKNGLKRGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGRFSYEEEEAIIQLHSVLGNKWSTIAASLPGRTDNEIKNYWNTHIKKRLLKMGIDPVTHAPCLDLQLLSSILNSSPYNSSPQLNYPGLFGMGSILNPSLLSLLASLLSSQNPNVINQNFQQNQCQSSQSTQLHSIPALHPNQPQVPVQENQSCAASINPSTLEYQLLKAKLDQIPPSNTNFSHQNTLPNLWQYNGGHLDEPAMQSFSSPCKFNSMVNNLLGDQILQNNVDMPNFNLGSLLSSTNASTSPSTLNSSSSTTFVNGARVTEDESDTYCSNMLMYNISSGLNIINDSRLL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1113 363 CDD SANT 69 112 IPR001005 -
Glsi14g1113 363 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi14g1113 363 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi14g1113 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 252 - -
Glsi14g1113 363 CDD SANT 16 61 IPR001005 -
Glsi14g1113 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi14g1113 363 Gene3D - 69 116 - -
Glsi14g1113 363 Gene3D - 14 66 - -
Glsi14g1113 363 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi14g1113 363 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi14g1113 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi14g1113 363 FunFam MYB-related transcription factor 13 66 - -
Glsi14g1113 363 FunFam Transcription factor MYB39 69 130 - -
Glsi14g1113 363 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi14g1113 363 SMART sant 13 63 IPR001005 -
Glsi14g1113 363 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1113 Glsi-ChrGlsi14 12043749 12045224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1113 1 356 MYB Transcription Factor Family AT4G21440 45.799 6.40e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi14g1113 Myb_DNA-binding 1.3e-16 CL0123