Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1106 ATGGCCACAGCAGAGCAAGAGAACTCACGTGCTTCACGCACGCACAACCAAATCACAGACGACGACGACGAAGAAGACTGCGACGTTATAGACAGCACCGACAACGACGAGGACGACGATGAATCGGAGAGCGAAGTAGAAGAAGACAATGGAAAAGACGAAGTCGACAAGGTTGTCGGGTGCTGGCCAATCAGGGCTGTGGGCGGAGGGTGCCGTTCTGGGAGGAAGGTGTTGGACCCGAGGGCCAAATGGGTTCAAGAATGGAACAGGGTGTTCCTGCTGGTGTGTGCGACGGGGTTGTTTGTGGACCCACTGTTCTTCTACGCGCTGTCAGTAAGCGACACTTGTATGTGCCTGTTCGTGGACGGGTGGTTCGCCATCACCGTGACGGTGCTCCGGTGCATGACGGATGCGTTGCACCTGTGGAACATGTGGTTGCAGTTCAAAATGTCGAAACGGTCCTTCCATATGGGTGCTGGAAGTGGCCTCACTGACACTACCCGTCGCTCCGCCGCTCTCCGCTATCTCAAAGCCAAGAGGGGCTTCTTCTTTGACCTCTTTCTTATTCTTCCTCTACCCCAGATTGTACTGTGGGTTGCAATCCCCTCTCTGTTGGAGAAAGGTTCGGTGACATTGGTGATGACGGTGTTGTTAATTATATTCCTCTTTCAATATCTTCCTAAGATCTATCACTCGGTTTGCCTCTTGCGTCGAATGCAAAACCTCTCCGGCTACATTTTTGGAACTGTTTGGTGGGGTATCGCCCTTAATATGATCGCATATTTTGTCGCCTCCCATGCAGCAGGGGCGTGCTGGTACTTGCTAGGGATCCAAAGAGCAGCCAAGTGCCTGAAAGAGCAGTGTGGGAAAACGAATGGTTGTGGCCTAAGAATGCTTTCTTGTGATCAACCTATATATTATGGAACAAATGGTATGGTGAGGCAAAGCCCGAGATTGGCATGGGCAGAGAACAGGCAAGCCAGGTCTTCTTGCTTAGATAGCCCTGACAATTACAACTATGGAGCTTATAAATGGACTGTTCAACTTGTCACTAATGATAGCCGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACTTTTGGTAATCTGGAAAGCACAACGGAATGGCTAGAAGTTGTTTTCAACATTATTGTTTTGACCAGTGGCCTTCTTCTTGTCACTATGTTAATTGGAAACATTAAGGTGTTTTTGCATGCAACAACATCGAAGAAGCAAGCGATGCAATTGAAGATGAGGAACATCGAATGGTGGATGAGGAAAAGGCACTTGCCTTCAAGGTTTCGGCAGCGGGTGCGTAACTACGAACGCCAGAGATGGGCCTCTACGCGTGGGGTCGACGAGTTCGAGATGATCAGAAATCTGCCCGAGGGCCTCCGAAGAGACATCAAGTACCATCTCTGTTTGGATTTGGTCAGACAGGTGCCACTATTTCAGCACATGGACGAATTGGTCCTAGAGAACATTTGCGACCGCGTGAAGTCCCTAGTATTCACAAGAGGAGAAACGATTACAAGAGAGGGAGACCCTGTTCAAAGAATGCTATTTGTAGTGAGGGGTCACCTTCAGAGCAGCCAAGTACTCCGAGATGGCGTGAGAAGTTGCTGCATGTTAGGCCCAGGAAACTTCAGCGGAGACGAGCTGCTTTCATGGTGTTTAAGAAGACCCTTCATCGAACGTCTTCCACCATCTTCATCAACCCTGATCACCCTGGAAACCACAGAGGCATTTGGGCTGGAAGCAGAGGACGTGAAGTATGTGACGCAACACTTCAGATACACGTTCATGAACGAGAAGGTGAGGAGAAGCGCGAGGTATTACTCGCCTGGATGGAGAACTTGGGCCGCGGTGGCAATTCAGTTGGCATGGAGGAGGTACAAGCACCGCTTAACTTTGACGTCGTTGTCGTTTATAAGGCCTCGGAGGCCTGTGTCCCGGTGCTCTTCCCTTGGGGAGGACAGGCTTCGCCTCTATACCGCATTGTTAACTTCACCAAAGCCTAATCAGGATGATTTCGACTTTTGA 2061 0.4993 MATAEQENSRASRTHNQITDDDDEEDCDVIDSTDNDEDDDESESEVEEDNGKDEVDKVVGCWPIRAVGGGCRSGRKVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSVSDTCMCLFVDGWFAITVTVLRCMTDALHLWNMWLQFKMSKRSFHMGAGSGLTDTTRRSAALRYLKAKRGFFFDLFLILPLPQIVLWVAIPSLLEKGSVTLVMTVLLIIFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCGKTNGCGLRMLSCDQPIYYGTNGMVRQSPRLAWAENRQARSSCLDSPDNYNYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRHLPSRFRQRVRNYERQRWASTRGVDEFEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLVFTRGETITREGDPVQRMLFVVRGHLQSSQVLRDGVRSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFMNEKVRRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPVSRCSSLGEDRLRLYTALLTSPKPNQDDFDF 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1106 686 Pfam Ion transport protein 88 406 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi14g1106 686 FunFam cyclic nucleotide-gated ion channel 4 487 605 - -
Glsi14g1106 686 Coils Coil 1 21 - -
Glsi14g1106 686 SUPERFAMILY cAMP-binding domain-like 415 603 IPR018490 -
Glsi14g1106 686 SUPERFAMILY Voltage-gated potassium channels 80 410 - -
Glsi14g1106 686 MobiDBLite consensus disorder prediction 1 53 - -
Glsi14g1106 686 Pfam Cyclic nucleotide-binding domain 509 597 IPR000595 -
Glsi14g1106 686 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 71 651 - -
Glsi14g1106 686 CDD CAP_ED 489 595 IPR000595 -
Glsi14g1106 686 ProSiteProfiles cAMP/cGMP binding motif profile. 489 599 IPR000595 -
Glsi14g1106 686 FunFam Cyclic nucleotide-gated ion channel 1 416 480 - -
Glsi14g1106 686 Gene3D Helix hairpin bin 414 480 - -
Glsi14g1106 686 MobiDBLite consensus disorder prediction 21 50 - -
Glsi14g1106 686 Gene3D Jelly Rolls 487 605 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1106 Glsi-ChrGlsi14 12008053 12013591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1106 76 685 Ion Channels AT5G54250 81.068 0.0 1030