Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1085 ATGAAAGGCCAGAGCATCAAAAGATTAGAAAAGGGTAAAAGGCCAAAAGCGAGAAAGAAATTTCTTTGGAAATCTCAGCTTCTTCTTCATTGTCTAGCTGAACTGGTGCGATTTTTTGGAGAATCAACAGCGATAATGGGAGTTTCCGATACAGACCTGCTTGCCCAATTGAGTTTGCCTCCGGGTTTTCGGTTTTACCCGACGGATGAGGAGCTTCTGGTTCAGTATCTATGCCGGAAGGTAGCGGGCCACCATTTCTCTCTGCAAGTCATTGGTGAAATCGACTTGTACAAGTTCGATCCATGGGTTCTTCCAGGCAAAGCCATTTTTGGCGAGAAAGAATGGTACTTCTTTAGCCCAAGAGATAGGAAGTACCCGAACGGCTCTCGACCCAACAGAGTTGCCGGATCTGGATACTGGAAAGCCACAGGAACTGACAAGGTTATCAGCACCGAAGGTCGAAAGGTTGGCATAAAGAAGGCTCTCGTTTTCTACATTGGCAAAGCACCCAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTTGAGTCTTCCCGAAAGAACGGCAGCACCAGGCTTGATGATTGGGTTCTTTGTCGGATATATAAGAAGAATTCGAGCTCGCAGAAGACTGCTTCCATGGTTCCAAGTAAAGAATACAGTAACGGTTCTTCTTCTTCCTCGTCGTCGCACCTAGACGACGTGCTAGAATCCTTGCCGGAAATCGACGACCGGTGTTTTGCTCTTCCGCGCGTGAACTCGCTCAAAACGTGGCAACACGATGAGAAGCTGAGTCTTCAGAATCTGGGCGGTGGGAGTTTCGTGGACTGGGCTAACCCGGCGGTTGTGGCCGAGTTCGTTTCGGGGAATCAAACACAGAGCCAATCTCAAGGGATGGGGAATTACAGTAGCATTAATGACATCATTGTCCCATCTATCCCGCCGCTGTGCCAAGTGGACGGGACGGTGCCGGAGAATCTGGGGAACGCAATGGAGGAGGAGGTTCAGAGTGGAGTGAGACGCCAACGGGTAGACAATTCCGGGTTTTATCAGCTGAACCCAAACGTTTTCACACAGGGGTTCACCGGCTCTGCCGACCCGTATGGATTCCGATACCCGAGTCAGCCCCACGGATACGGTTTCCAACAATGA 1161 0.4996 MKGQSIKRLEKGKRPKARKKFLWKSQLLLHCLAELVRFFGESTAIMGVSDTDLLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQVIGEIDLYKFDPWVLPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLESSRKNGSTRLDDWVLCRIYKKNSSSQKTASMVPSKEYSNGSSSSSSSHLDDVLESLPEIDDRCFALPRVNSLKTWQHDEKLSLQNLGGGSFVDWANPAVVAEFVSGNQTQSQSQGMGNYSSINDIIVPSIPPLCQVDGTVPENLGNAMEEEVQSGVRRQRVDNSGFYQLNPNVFTQGFTGSADPYGFRYPSQPHGYGFQQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1085 386 Pfam No apical meristem (NAM) protein 60 184 IPR003441 GO:0003677|GO:0006355
Glsi14g1085 386 SUPERFAMILY NAC domain 54 207 IPR036093 GO:0003677|GO:0006355
Glsi14g1085 386 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 58 254 - -
Glsi14g1085 386 Gene3D NAC domain 68 213 IPR036093 GO:0003677|GO:0006355
Glsi14g1085 386 MobiDBLite consensus disorder prediction 213 235 - -
Glsi14g1085 386 FunFam NAC domain-containing protein 72-like 68 212 - -
Glsi14g1085 386 ProSiteProfiles NAC domain profile. 59 207 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1085 Glsi-ChrGlsi14 11876077 11878487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1085 46 373 NAC Transcription Factor Family AT1G52890 57.227 4.08e-118 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi14g1085 NAM 2.4e-36 No_clan