Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1084 ATGGAGCGGGAGATGGCAGACATAGAGTCTCAAACTACTTACAAAGCATCATCACTGGAGGAAGTGCCTCACATCTCCCACAAGAGGAACAATCGTCCTGTTATTCTCATGACTTTTGTTGTTAACATTCTAATAATTTTTGTACAGTTTGATGATGTTGTTTACAAAATTAAGACCAAAAAAGGAGGATTATTTGAGAAGAACATGAAATCGGAAGAGAAAGTAATACTTAAGGGAGTGACAGGGATGGTGGAACCTGGCGAAATTCTAGCCATGCTTGGTCCATCTGGGAGTGGAAAAACAACCCTTCTAACAGCGTTAGGAGGCAGGCTGGGAGGGAGACTTGATGGAACCATAACTTACAATGGCGAACTGTTCTCAAATGCAATGAAGCGAAGAACTGGGTTTGTGACCCAAGATGATGTTCTCTATCCCCACTTGACTGTGACTGAGACTTTAGCGTTCACTGCCCTTCTCAGGTTGCCCAATCGTTTCACCAAACAAGAGAAGATTATGCATGCAGAAGCTGTGATAGCTCAGCTTGGTTTAACCAAGTGCAAGGATAGCATCGTTGGAGGGCCATTGCTGAGAGGGGTTTCTGGGGGGGAGAGAAAAAGGGTTAGCATTGGACAAGAAATGCTCATCAACCCTGGCTTGTTGTTCTTGGATGAACCCACCTCTGGCCTTGACTCAACCACAGCTCAGAGAATTGTCTCTACTTTGTGGGAGCTAGCCAGAGCTGGGAGAACTGTAGTGATGACCATACACCAACCTTCGAGTAGGCTATACTACATGTTTTCTAAGATTTTACTGCTATCAGAAGGAAGCCCATTGTTCTTTGGAAAAGGGTCTGAAGTTATGCAATATTTTTCAAGCATTGGGTATGCCCCAACAGTGGGCATGAACCCTTCTGATTTCCTTTTGGATCTTGCTAGCGGTATCTACACTGATGAATGTTATGAAGACCATGCCTTACTTAAGCAGAAATTGATTTGTGCGTATAAGAACAACCTGGATGCCCAATTGAAGACAGTGGTTCATGAAATCGGTGACTCTGGCACAAGTCAAGGTAGATTTCAAGACAGAGAGTTTGGGAGATGGCCTACTACTTGGTTACAGCAATTCAGTGTGTTGCTTAAAAGAGGAATCAAGGAGAGAAAATATGAATCATTCTCTGGCCTCAAGATTGGTCAGGTCCTTGCGGTTGCCATTATTTCAGGACTATTGTGGTATAAGTCAGATATTTTGCACTTGCAGGATCAGATCGGGCTTCTATTCTTCATATCTGGCTTCTGGAGTTTCTTCCCTCTTTTCCAAGCTATCTTCACCTTCCCCCAAGAACGGATGATGATTGAAAAAGAAAGATCCTCTGGCATGTACAGGCTATCCTCCTACTTCATGTCAAGAATGGTAGCTGACCTTCCGATGGAACTTGCCCTTCCCATCGTATTTCTCCTCATATCCTATTGGATGGCAGGGCTGAAACCCAACGCAGTAAACTTCTTATACACACTCTTCAGCCTCTTACTCAATGTGTTAGTCTCACAAGGCCTAGGCCTTGCCCTTGGTGCCATTGTAATGGATCAAAAATCTGCAACCACACTTGGCTCTGTGATCATGCTGAGTTTCCTGCTAGCTGGCGGATATTACGTTCAGCATGTGCCAAAGTTCATAGCATGGATCAAGTACATCTCCATTAGCTACTACACATACCAGCTCTTTTTGGGGTCTCAGTATGACACTAAGGACACATACCCTTGTTCTAAAGGCCAGTGTTCAGTTGCAGAGTTTCCTCCTATAAAGCAAATGGGGCTTCATCTGGAAGAACAAGTCATGGCTACATTGGCTCTAGGGATGATGCTGATAGGTTACAGAGTTATAGCTTATTTTGCTCTTATGAGGATTGGGGTCACAAAGAAATTGGGGTAG 1929 0.4401 MEREMADIESQTTYKASSLEEVPHISHKRNNRPVILMTFVVNILIIFVQFDDVVYKIKTKKGGLFEKNMKSEEKVILKGVTGMVEPGEILAMLGPSGSGKTTLLTALGGRLGGRLDGTITYNGELFSNAMKRRTGFVTQDDVLYPHLTVTETLAFTALLRLPNRFTKQEKIMHAEAVIAQLGLTKCKDSIVGGPLLRGVSGGERKRVSIGQEMLINPGLLFLDEPTSGLDSTTAQRIVSTLWELARAGRTVVMTIHQPSSRLYYMFSKILLLSEGSPLFFGKGSEVMQYFSSIGYAPTVGMNPSDFLLDLASGIYTDECYEDHALLKQKLICAYKNNLDAQLKTVVHEIGDSGTSQGRFQDREFGRWPTTWLQQFSVLLKRGIKERKYESFSGLKIGQVLAVAIISGLLWYKSDILHLQDQIGLLFFISGFWSFFPLFQAIFTFPQERMMIEKERSSGMYRLSSYFMSRMVADLPMELALPIVFLLISYWMAGLKPNAVNFLYTLFSLLLNVLVSQGLGLALGAIVMDQKSATTLGSVIMLSFLLAGGYYVQHVPKFIAWIKYISISYYTYQLFLGSQYDTKDTYPCSKGQCSVAEFPPIKQMGLHLEEQVMATLALGMMLIGYRVIAYFALMRIGVTKKLG 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1084 642 Pfam ABC-2 type transporter 256 321 IPR043926 GO:0140359
Glsi14g1084 642 Gene3D - 66 293 IPR027417 -
Glsi14g1084 642 FunFam ABC transporter G family member 22 64 293 - -
Glsi14g1084 642 Pfam ABC transporter 77 227 IPR003439 GO:0005524
Glsi14g1084 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 293 IPR027417 -
Glsi14g1084 642 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 48 299 IPR003439 GO:0005524
Glsi14g1084 642 Pfam ABC-2 type transporter 373 579 IPR013525 GO:0016020|GO:0140359
Glsi14g1084 642 SMART AAA_5 86 276 IPR003593 GO:0016887
Glsi14g1084 642 ProSitePatterns ABC transporters family signature. 199 213 IPR017871 GO:0005524|GO:0016887
Glsi14g1084 642 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 26 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1084 Glsi-ChrGlsi14 11869990 11872778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1084 76 260 Calmodulin-binding Proteins AT2G36910 28.497 4.25e-11 64.3