Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1073 ATGAACAAAGCCGGGGACGAAGAAGACGAAGACGTTTGCTTCTACGAGTCCCACGACCGCTTGGTTTCGTCCTCTTGCTCCTGTTCCACTTCCAACTCCGACGACGACAACGACTTCAATTCCAACTCTCCCAATTATGGTGTGGACAAACCCTTCCCTGTACCCAAATTCCCGGCGGCCATGTGCAACTACGATATATGGATCTCCGAACTCTCCTCAGTTTCCGAACGCCGAACCCGTCTCCTTCGCGAGATGGGTCTTGCCGGCGACCCATCATTGTCCCGGGGAAAGCCTGCTTCAGCCGTTGATCTTAGGGAAGTGGGCAATGGAGAATTTGACCGATCGGTGTCATCCGATCACTTGAGTCACCAAGAACAGGGTGAGAGTGACACTTCTGGTTGCACCGCGGGCATATCCCAATCAAAATCAAACGGTGGGGCGGATCGAAGTGACTTGCCAGTGTGTGGTCGGCCTCATGATCATTGTAATGGGTCTTCTTCTTCTTTTGGTTCCTCAATTCTTTCTATTCATTCGGTCGCACCAGAGACCGGCTCATTTGTAAATAACCGTAATCAAGTTGTTAAGTCAAGGTGCGGTGATGGCAATGGATCCCTGGTTGCTGGTGCCGCTTCCCTCAGTAAGCCGCCTTCGGAGAAAAATTGTAGAAGTGTGGATGAAATCCAAATCGACTCCCCGAACTTGAGTGTGGATTTCGGCCATTTTTCTGTGGAGGCGGTTTCAGAGAATGCTGGTCGTGGAGAGGTGGAGGAGGGTGTGGCCTGTAATGGGGTTGACAGGACCAACGAACTAGCGTGCACCATAAGAGATCTCGATAATGGGAAAGAATTTGTTGTCAAGGAGATTAGGGAAGATGGGACGTGGAACAAATTAAAGGAAGTGGGAACTGGAAGGCACTTGACTATGGAGGAGTTTGAGATGACGGTGGGGCACTCACCTATTGTTCAAGAATTGATGCGACGGCAAAATGTTGAGGAGGGTAATAAGGACAATGTAGATTCAAATGCGAATTCAAATGAAAATGGTGGTAGTGGAGGTGGTTCCAAAGTGAAGAAGAAAGGGAGTTGGATTAAGAGTATAAAGAGTGTTGCAAGCACCATGACGGGTCATAAGGAGAGACGGAGTAGTGATGAAAGAGATACCTCATCAGAGAAGGGTGGGCGGAGGTCAAGCTCTGCCACAGATGATAGCCAGGATGCTTGTTTACATGGGCCTGAAAGAGTACGGGTTAGGCAGTATGGGAAGTCGTGTAAAGAGCTCACAGCACTCTATAAGAACCAGGAGATACAAGCTCATAATGGATCTATATGGAGCATTAAGTTTAGTTTGGATGGAAAATATCTCGCTAGTGCAGGTGAGGATTGTGTAATTCACGTTTGGCAAGTTGTGGAGACAGGGAGAAAGGGGGAGCTGCTGATGGAGAAACCAGAATATGGGAATATGAATATGTTGTTTGTTATGAATGGGGCCCAAGAACCAACTTTGCTGACCCCTATCAAGGACAGCCATCCAGAGAAGAAGAGAAGGGGGAGGTCATCCATAAGCAGAAAATCATTGAGTTTGGACCAGTTAGTGGTACCAGAAACTGTATTTGCACTCACAGAGAAACCTGTTTGCTCATTCCAAGGTCATGTCAATGATGTGCTTGACCTATCTTGGTCCAAATCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGTCTTGTTTGAAAGTTTTTTCACATAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGTCAAGTTGTTGATTGGACTGATCTGCATGAGATGGTCACTGCTGCTTGCTATACACCTGATGGTCAGAGTGCACTAGTTGGTTCATACAAGGGTAACTGCCACTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTTCAGAACAAGAAAAAGAAGTCGCATTATAAGAAAATTACTGGCTTCCAGTTTATCCCAGGAAGTTCATCAGAACTACTCATCACATCTGCTGATTCACGAATTCGGGTGGTTAATGGTGTTGATCTGGTTCATAAGTTTAAAGGGTTTCGTAACACAAATAGCCAAATTTTAGCTTCCTTCACAGCAAATGGAAGATATATTGTCTCAGCAAGTGAGGATTCCCATGTATATATATGGAAAAATGAAGCTGATTGCAGGCCCAACAGAAGCAAAGGTGTTAAGATCACGCAGTCATATGAACATTTTCACTGTAGAGATGTGTCAGTGGCCATTCCATGGCCTGGGAGCGGTGATGCATGGGAAATGCGTGATACTTTCTCCGGGGAACAAACTGGGGTTGATAGTAACCTGGATGAGGTCTCATCGGTCAGTCATCCTCCCACCCCAGTGGACGAATATTTCGGTACAGAGGGCTCATTATCTGCACCAGGGTGCAACAGTATTCCACTTCATGGAACCATAGCCAGTGCTACAAACAGCTATTTTTTCGATAGAATCTCTGCGACATGGCCGGAGGAAAAACTTGTTCTAGCTGCCAGGAGACGTAGCCCTCGAGTCAGTATGGACATCTCTAATGGGGTTAATCAAGACGTGTCGGCCTGGGGTCTGGTGATTGTAACTGCAGGCCTTCGAGGGGAAATTCGAGCTTTCCAGAATTTTGGATTGCCGCTGCGGATATAA 2766 0.4624 MNKAGDEEDEDVCFYESHDRLVSSSCSCSTSNSDDDNDFNSNSPNYGVDKPFPVPKFPAAMCNYDIWISELSSVSERRTRLLREMGLAGDPSLSRGKPASAVDLREVGNGEFDRSVSSDHLSHQEQGESDTSGCTAGISQSKSNGGADRSDLPVCGRPHDHCNGSSSSFGSSILSIHSVAPETGSFVNNRNQVVKSRCGDGNGSLVAGAASLSKPPSEKNCRSVDEIQIDSPNLSVDFGHFSVEAVSENAGRGEVEEGVACNGVDRTNELACTIRDLDNGKEFVVKEIREDGTWNKLKEVGTGRHLTMEEFEMTVGHSPIVQELMRRQNVEEGNKDNVDSNANSNENGGSGGGSKVKKKGSWIKSIKSVASTMTGHKERRSSDERDTSSEKGGRRSSSATDDSQDACLHGPERVRVRQYGKSCKELTALYKNQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVETGRKGELLMEKPEYGNMNMLFVMNGAQEPTLLTPIKDSHPEKKRRGRSSISRKSLSLDQLVVPETVFALTEKPVCSFQGHVNDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQSALVGSYKGNCHLYNTSENKLQQKSQINLQNKKKKSHYKKITGFQFIPGSSSELLITSADSRIRVVNGVDLVHKFKGFRNTNSQILASFTANGRYIVSASEDSHVYIWKNEADCRPNRSKGVKITQSYEHFHCRDVSVAIPWPGSGDAWEMRDTFSGEQTGVDSNLDEVSSVSHPPTPVDEYFGTEGSLSAPGCNSIPLHGTIASATNSYFFDRISATWPEEKLVLAARRRSPRVSMDISNGVNQDVSAWGLVIVTAGLRGEIRAFQNFGLPLRI 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1073 921 ProSiteProfiles Trp-Asp (WD) repeats profile. 435 468 IPR001680 GO:0005515
Glsi14g1073 921 MobiDBLite consensus disorder prediction 373 398 - -
Glsi14g1073 921 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 621 - -
Glsi14g1073 921 FunFam WD repeat-containing protein 44 528 794 - -
Glsi14g1073 921 PANTHER WD REPEAT DOMAIN 44 6 918 IPR040324 -
Glsi14g1073 921 MobiDBLite consensus disorder prediction 335 351 - -
Glsi14g1073 921 ProSiteProfiles Trp-Asp (WD) repeats profile. 734 755 IPR001680 GO:0005515
Glsi14g1073 921 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 621 IPR001680 GO:0005515
Glsi14g1073 921 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 435 468 - -
Glsi14g1073 921 MobiDBLite consensus disorder prediction 112 159 - -
Glsi14g1073 921 MobiDBLite consensus disorder prediction 127 147 - -
Glsi14g1073 921 SUPERFAMILY WD40 repeat-like 433 756 IPR036322 GO:0005515
Glsi14g1073 921 Gene3D - 524 778 IPR015943 GO:0005515
Glsi14g1073 921 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 547 581 - -
Glsi14g1073 921 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 587 IPR001680 GO:0005515
Glsi14g1073 921 PRINTS G protein beta WD-40 repeat signature 565 579 IPR020472 -
Glsi14g1073 921 PRINTS G protein beta WD-40 repeat signature 454 468 IPR020472 -
Glsi14g1073 921 PRINTS G protein beta WD-40 repeat signature 607 621 IPR020472 -
Glsi14g1073 921 Pfam WD domain, G-beta repeat 734 755 IPR001680 GO:0005515
Glsi14g1073 921 Pfam WD domain, G-beta repeat 583 620 IPR001680 GO:0005515
Glsi14g1073 921 Pfam WD domain, G-beta repeat 434 466 IPR001680 GO:0005515
Glsi14g1073 921 Pfam WD domain, G-beta repeat 542 577 IPR001680 GO:0005515
Glsi14g1073 921 MobiDBLite consensus disorder prediction 333 413 - -
Glsi14g1073 921 FunFam Transducin/WD40 repeat-like superfamily protein 393 497 - -
Glsi14g1073 921 SMART WD40_4 540 578 IPR001680 GO:0005515
Glsi14g1073 921 SMART WD40_4 581 620 IPR001680 GO:0005515
Glsi14g1073 921 SMART WD40_4 668 713 IPR001680 GO:0005515
Glsi14g1073 921 SMART WD40_4 428 467 IPR001680 GO:0005515
Glsi14g1073 921 SMART WD40_4 623 661 IPR001680 GO:0005515
Glsi14g1073 921 SMART WD40_4 714 755 IPR001680 GO:0005515
Glsi14g1073 921 MobiDBLite consensus disorder prediction 112 126 - -
Glsi14g1073 921 Gene3D - 393 498 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1073 Glsi-ChrGlsi14 11790146 11796287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1073 534 752 U-box Gene Family AT1G04510 26.446 5.32e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1073 14 11790146 11796287 Glsi14g1073 14 11790146 11796287 ECH