Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1068 ATGGGGCCTCTTATCATTCCTTCTGGTTTTCTTTCCTATCTTTTCCTCGTTCTCAGTGCAGTTAGATTATTCCACGTCCAAGCCTTCGCTTGGCTTAATGCTCATGCAACCTTCTATGGGGCCAATCAAAATCCCACCACTTTGGGAGGAGCATGTGGTTATGATAATACGTTTCATGCTGGGTTTGGAGTGAACACTGCGGCGGTGAGCACGATGCTGTTCAGAGGTGGGGAGGCTTGTGGTGCTTGCTACCAAGTGATGTGCGACTACCGGGTCGACCCTAAATGGTGCCTCCCACGCCGTACCGTGACTGTCACCGCCACCAATTTTTGCCCTCCCAACAACCACGGAGGCTGGTGTGACCCCCCTCATCACCACTTCGACATGTCCATGCCTGCTTTCTTTCGCATTGCACGCCAAGGCAATGAAGGCATTATCCCAGTCCTCTATACAAGGGTGGCATGCAAGAGAAGAGGGGGTGTAAGGTTCACGTTGAAAGGGCAATCAAATTTCAACATGGTGATGATATCCAACGTTGGAGGGAGTGGGGATTTGAAGGGTGTGTGGATAAGGGGTTCCAGAAGAGGAACGTGGTGGCCAATGCATAGGAACTGGGGAGCCAACTGGCAAAGCAACATGGATCTTCGAAACCAAAACCTCTCGTTTAAGCTCGCTTTGGCCGATGGCAAGACATTGGTGTTTCTCAATGTGGTTCCTTCTACTTGGAGGTTCGGACAGACATTTTCTTCCCAGAATCATTCAACAAGGCAGAGGATATCTTCTGCATCTATCCGCAGAATCAAGTGTCGGGCATCAGAGCAGCACACACAGCCCCAACATTTTTCACAACAAACTGCTATGGGAACAACATTCTTCTCTGCAACTCTGGAAAAATCTCTGAACTTGACAACAAAATTGTTACTTTCAAGATCATTCTGCTCTGCAAAGGAGGCCACTATCAGAAGAAACCTCGCCTCTAGAATCATTCCTCTTGGAAACCCTTCCATCAGTTTAGTTCCCGTTCTTGACAAGTGGGTCGAAGAAGGCAACACAGTCAATGGCCTCGAGCTCCGGAGCATCGTCAAAACCCTCCGTGGCCGCTCGCGCCTCAAGCAAGCACTTGAGGTTTCTGAGTGGATGAGTAGCAAGGGACTGTGCCCATTTTTGTCAGGTGACCAAGCCATGCAGCTAGATCTTATCAGTAGAGTACGTGGCCTGAGTTTTGCGGAGAGTTATTTTCAGGATCTGAGTGAAAGTGACAAAACTGAGAAGCAATATAGTGCTCTTTTAAAATGTTATGCCAGAGAAGGCTTACTTGATAAGTCACTTTCCCTCATGCACAAGATGAAGGAGATGGGTTTTGCTTCTCCTCTGAACTATAATAATATAATGTGCCTCTACATGCACACAGATCAACTTGAGAAAATCCCTGATGTTTTAGTACAAATGAAAGAGGATGGTGTGTCCCCAGACAGTTTTAGCTACAGGATTTGCATAAGTTCTTATGGTGCCAGATCTGACCTTATGAATATGGAGAAATTGTTGGAGGAAATGGAAAGGCAAAGCTTCCTTTTCAAAGGTTGGAGTACATATGCTATGGTGGCCAACTTCTTCATAAAGGCAGGTCTGAAGGAGAAAGCTTTGACTTACTTGAAGCATTGTGAAGATAGGGCAGTCCACGATGCACTTGCCTACAATCATCTGATTTCACACTATGCAACTCTTGGGAACAAAAAAGCAGTGATGAGACTTTGGAAACTTCAAAAAGCCAAGTGTAAGAAGCAAGTTAACAGGGACTATATAACCATGCTGGGTTCTCTGGTGAAGCTAGGGGATCTTGAGGAAGGTGAAAAATTGCTTGTGGAGTGGGAGTCGTCTGGTAACACTTGTGATTTCAGAGTGCCAAACGTTCTCTTTATTGGGTACTCTCAGAAGGGAATGATTGAAAAGGCTGAAACAATGCTCCTAAGCATGGTCAATAAAGGGAAGACTCCAACTCCTAATAGTTGGGCCATCATTGCATCTGGGTATGTGGCCAAGCAGAACATGGAGAAGGCCTTTCAGTGCATGAGGGAAGCTGTGGCTGTACGGGCTGAAAATGAAGGTTGGAGGCCAAAACTTGACGTCATTTCCAGCATATTGAGATGGACTACTGATAATAGAAATATGGAGGAAGTAGAAGATTTTGTAAATTCATTAAAAACTGTGATTCCCATGAACAGGGACATGTATCTTTCCTTGATGAAGGTGTATGTTAGATGTGGGAAGGAAGTAGATGGCATTTTAGAGAGTATGAAAGCTGATCAGATAAAACTCGATGAAGAAATAGAGGAAATCCTTAGCTCTAAATAG 2352 0.4537 MGPLIIPSGFLSYLFLVLSAVRLFHVQAFAWLNAHATFYGANQNPTTLGGACGYDNTFHAGFGVNTAAVSTMLFRGGEACGACYQVMCDYRVDPKWCLPRRTVTVTATNFCPPNNHGGWCDPPHHHFDMSMPAFFRIARQGNEGIIPVLYTRVACKRRGGVRFTLKGQSNFNMVMISNVGGSGDLKGVWIRGSRRGTWWPMHRNWGANWQSNMDLRNQNLSFKLALADGKTLVFLNVVPSTWRFGQTFSSQNHSTRQRISSASIRRIKCRASEQHTQPQHFSQQTAMGTTFFSATLEKSLNLTTKLLLSRSFCSAKEATIRRNLASRIIPLGNPSISLVPVLDKWVEEGNTVNGLELRSIVKTLRGRSRLKQALEVSEWMSSKGLCPFLSGDQAMQLDLISRVRGLSFAESYFQDLSESDKTEKQYSALLKCYAREGLLDKSLSLMHKMKEMGFASPLNYNNIMCLYMHTDQLEKIPDVLVQMKEDGVSPDSFSYRICISSYGARSDLMNMEKLLEEMERQSFLFKGWSTYAMVANFFIKAGLKEKALTYLKHCEDRAVHDALAYNHLISHYATLGNKKAVMRLWKLQKAKCKKQVNRDYITMLGSLVKLGDLEEGEKLLVEWESSGNTCDFRVPNVLFIGYSQKGMIEKAETMLLSMVNKGKTPTPNSWAIIASGYVAKQNMEKAFQCMREAVAVRAENEGWRPKLDVISSILRWTTDNRNMEEVEDFVNSLKTVIPMNRDMYLSLMKVYVRCGKEVDGILESMKADQIKLDEEIEEILSSK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1068 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Glsi14g1068 783 SMART dpbb_1 66 150 IPR007112 -
Glsi14g1068 783 SUPERFAMILY TPR-like 433 702 IPR011990 GO:0005515
Glsi14g1068 783 Gene3D Tetratricopeptide repeat domain 353 596 IPR011990 GO:0005515
Glsi14g1068 783 CDD DPBB_EXPA_N 31 155 - -
Glsi14g1068 783 PANTHER OS12G0527900 PROTEIN 263 771 - -
Glsi14g1068 783 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Glsi14g1068 783 Gene3D - 160 253 IPR036749 -
Glsi14g1068 783 NCBIfam pentatricopeptide repeat 460 492 IPR002885 -
Glsi14g1068 783 NCBIfam pentatricopeptide repeat 426 454 IPR002885 -
Glsi14g1068 783 SUPERFAMILY Barwin-like endoglucanases 21 178 IPR036908 -
Glsi14g1068 783 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Glsi14g1068 783 Gene3D Tetratricopeptide repeat domain 664 783 IPR011990 GO:0005515
Glsi14g1068 783 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 160 IPR007112 -
Glsi14g1068 783 Pfam PPR repeat family 460 501 IPR002885 -
Glsi14g1068 783 Gene3D - 19 156 IPR036908 -
Glsi14g1068 783 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Glsi14g1068 783 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Glsi14g1068 783 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Glsi14g1068 783 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Glsi14g1068 783 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Glsi14g1068 783 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Glsi14g1068 783 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Glsi14g1068 783 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Glsi14g1068 783 Pfam Lytic transglycolase 66 150 IPR009009 -
Glsi14g1068 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
Glsi14g1068 783 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Glsi14g1068 783 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Glsi14g1068 783 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Glsi14g1068 783 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Glsi14g1068 783 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Glsi14g1068 783 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Glsi14g1068 783 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Glsi14g1068 783 Pfam PPR repeat 426 454 IPR002885 -
Glsi14g1068 783 Pfam PPR repeat 600 627 IPR002885 -
Glsi14g1068 783 Pfam PPR repeat 636 662 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1068 Glsi-ChrGlsi14 11733345 11738250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1068 12 251 Expansin Gene Family AT3G15370 58.456 7.66e-107 327