Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1032 ATGGAGGCCGAGAGTTTTGAGAGGAAGAGAACATCCACTGAGAAGGTTATAAGAAAGGATAAAATAGTTGATGAAGAAGTAGATGATGAAGTAGAAGAGGAGGATGAAAGTGGTGGTGCACAAGAGAACAAGAAGATAGAGGTAGGTAGGAGTGGGAGAAGAGGGTCAAGTGGGGGTTTTGGAGTTTCTCTTTCTCCACCTTCCTGTCAGGCAGAGAGGTGTGGGGCTGATTTGAGCGATGCAAAGCGATACAATCGCCGCCATAAGGTGTGTGAGCTTCATTCCAAGGCTCCTGTTGTAATGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCACGACGTGGGGGAATTTGATGAAGCCAAGAGAAGCTGCAGGAGGCGGTTGGCTGAACACAATGAGCGGCGCCGTAAAAGCGTTGCTGAAACTAATTACAATGATGGAAGCAAAAGCCATCATCATCACCACCCAATGGAAAGCCACAGGGGAAGAAGAGTTCATCAGATCAACATTTCAGGGAGTTGTGCCTCCAAATCTTTCCATATCAAATAA 564 0.4734 MEAESFERKRTSTEKVIRKDKIVDEEVDDEVEEEDESGGAQENKKIEVGRSGRRGSSGGFGVSLSPPSCQAERCGADLSDAKRYNRRHKVCELHSKAPVVMVAGLRQRFCQQCSRFHDVGEFDEAKRSCRRRLAEHNERRRKSVAETNYNDGSKSHHHHHPMESHRGRRVHQINISGSCASKSFHIK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1032 187 Gene3D - 61 130 IPR036893 GO:0003677|GO:0005634
Glsi14g1032 187 Pfam SBP domain 69 142 IPR004333 GO:0003677
Glsi14g1032 187 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677|GO:0005634
Glsi14g1032 187 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Glsi14g1032 187 MobiDBLite consensus disorder prediction 1 71 - -
Glsi14g1032 187 MobiDBLite consensus disorder prediction 133 158 - -
Glsi14g1032 187 MobiDBLite consensus disorder prediction 1 25 - -
Glsi14g1032 187 MobiDBLite consensus disorder prediction 133 170 - -
Glsi14g1032 187 FunFam Squamosa promoter-binding-like protein 14 61 130 - -
Glsi14g1032 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 49 144 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1032 Glsi-ChrGlsi14 11435660 11436694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1032 48 153 SBP-box Gene Family AT1G53160 64.151 8.53e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi14g1032 SBP 4.2e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1032 14 11435660 11436694 Glsi11g2351 11 16458774 16459736 ECH
Glsi14g1032 14 11435660 11436694 Glsi14g1032 14 11435660 11436694 ECH