Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1026 ATGGCTCCCAGAGACAGACCCGTCTCTCTTGCCGGATCCAACCCGACCCTCGCCTCAAAGGAGATTCGTTATAGAGGTGTCAGGAAGCGACCGTGGGGGCGTTATGCTGCTGAGATCCGTGACCCGGGTAAGAAAACTCGCGTCTGGCTTGGCACCTTCGACACTGCTGAGGAAGCGGCGCGTGCATACGACGCGGCTGCCAGGGAGTTCCGTGGCGCCAAGGCAAAGACCAATTTTCCCACTCCGTCTGAGCTCATAAATAACTCCACCACCACCCGTAGTCCTAGCCAGTGCAGCACCCTTGACTCTTCCTCTCCCCCGCCGCCACCTCTTCTGGACCTCACCCTGACCCCACTTTCCGCCGGCGGCGCTCTGGGGTTACCAGTGATACCGGTGGCTCGCCCGGTCATGTTTTTCGATGCTTTCGCTCGAGTGGAGAGCATGAGAAGAGTTGGTCGCCGCGAGATGTGCGGGTTTGATCGCCCGGTGACTGATTTCCGCCACGCTGTGGGCGGCGGTGGTGCCCATAGTGACTCGGACTCGTCCTCCGTCGTGGACTATGAGCATGTTCCACCTCGGAGACTGTTGGATCTTGACCTTAACGTTGCTCCTCCGGCGGAGGTTGCCTGA 630 0.6016 MAPRDRPVSLAGSNPTLASKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPSELINNSTTTRSPSQCSTLDSSSPPPPPLLDLTLTPLSAGGALGLPVIPVARPVMFFDAFARVESMRRVGRREMCGFDRPVTDFRHAVGGGGAHSDSDSSSVVDYEHVPPRRLLDLDLNVAPPAEVA 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1026 209 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Glsi14g1026 209 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Glsi14g1026 209 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Glsi14g1026 209 FunFam Ethylene-responsive transcription factor 2 23 81 - -
Glsi14g1026 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 146 - -
Glsi14g1026 209 MobiDBLite consensus disorder prediction 80 101 - -
Glsi14g1026 209 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Glsi14g1026 209 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Glsi14g1026 209 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Glsi14g1026 209 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Glsi14g1026 209 MobiDBLite consensus disorder prediction 74 110 - -
Glsi14g1026 209 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1026 Glsi-ChrGlsi14 11394754 11395383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1026 19 140 AP2-EREBP Transcription Factor Family AT3G15210 64.706 5.25e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi14g1026 AP2 1.9e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1026 14 11394754 11395383 Glsi11g2340 11 16390150 16390839 ECH
Glsi14g1026 14 11394754 11395383 Glsi14g1026 14 11394754 11395383 ECH