Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1022 ATGCCCGGTTCGCATTACCAAGTGGGTGGGAAAGGGACGGAACGGAGGAACCGTGAGTTCCAAGCCAAAAAGAGTGCTCTTTCTTTCTTTCTTTTTCAAGCTTCTCCAATGGACAGCTACTATCACTTTGATAACAGTGATGCTCATTTGCCTCCGGGGTTTCGCTTCCACCCTACTGACGAGGAGCTCATCACTTACTATCTCCTCAAGAAGGTTCTAGACAACAGCTTCACAGGAAGAGCCATTGCTGAAGTTGACCTGAACAAGTGTGAGCCATGGGAGCTCCCTGAGAAAGCGAAAATGGGTGAGAAGGAGTGGTACTTCTTCAGTCTTCGTGATCGAAAGTACCCAACTGGGCTACGTACTAATAGGGCTACAGAGGCTGGCTACTGGAAAGCCACTGGGAAAGACAGGGAGATTTACAGCTCCAAAACTTGCTCTCTCGTTGGCATGAAGAAAACTCTGGTTTTCTACAGAGGCAGAGCTCCCAAAGGCGAGAAGAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTATCATTACCTCTCACGGAGCTCCAAGGATGAGTGGGTCATCTCTCGTGTGTTCCAGAAGAGCATCTCCGGTAGTGGGGGCTCCACTGTATCTTCTGCCAGTGGTTCCAAGAAGACCCGAACCAGCTCACCTGTTAATATGAGGCTCTGCCCAGATCCCAGTTCTCCCTCTTCTGTCTATCTTCCACCTCTGCTTGACTCCTCCCCTTACCCCACCAGTAGCACTGCCGCCTCCGCCGCGCTCAACGACCGTGACAGCTGCTCTTACGATTGCACCACTCCAAGAGAGCACGTGTCCTGTTTCTCCACATTCTCCGCAGCCGCTAACAATATCAACCTCACCAATGCAAGCTTCGACCTTGCTCCTCCATCTCTCGCTCTGGACCCGTTTGCTCGATTCCAGAGAAACGTTGGCGTTTCTGCTTTTCCGAGCCTGAGGTCACTGCAAGAAAATCTACAACTGCCTTTCTTCTTCTCCCCAGGGGCACATCCCGCCGTCCATGGAGGCTCCTGTGACATGAACGGATGTAGCGCAGTGGGGAGCTGGAATATGCCGGAGGAGCAGAAGGTGGCCGACGGTGGTTCGAGCATGTCAGTTAATCCCTCGGAGCTAGATTGCATGTGGGGCTACTAG 1179 0.5216 MPGSHYQVGGKGTERRNREFQAKKSALSFFLFQASPMDSYYHFDNSDAHLPPGFRFHPTDEELITYYLLKKVLDNSFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSISGSGGSTVSSASGSKKTRTSSPVNMRLCPDPSSPSSVYLPPLLDSSPYPTSSTAASAALNDRDSCSYDCTTPREHVSCFSTFSAAANNINLTNASFDLAPPSLALDPFARFQRNVGVSAFPSLRSLQENLQLPFFFSPGAHPAVHGGSCDMNGCSAVGSWNMPEEQKVADGGSSMSVNPSELDCMWGY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1022 392 Gene3D NAC domain 59 205 IPR036093 GO:0003677|GO:0006355
Glsi14g1022 392 FunFam NAC domain-containing protein 100-like 59 206 - -
Glsi14g1022 392 SUPERFAMILY NAC domain 43 202 IPR036093 GO:0003677|GO:0006355
Glsi14g1022 392 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 49 257 - -
Glsi14g1022 392 MobiDBLite consensus disorder prediction 204 235 - -
Glsi14g1022 392 ProSiteProfiles NAC domain profile. 50 202 IPR003441 GO:0003677|GO:0006355
Glsi14g1022 392 MobiDBLite consensus disorder prediction 204 238 - -
Glsi14g1022 392 Pfam No apical meristem (NAM) protein 51 177 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1022 Glsi-ChrGlsi14 11378171 11382618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1022 40 392 NAC Transcription Factor Family AT5G53950 56.555 3.86e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi14g1022 NAM 4.4e-41 No_clan