Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1016 ATGGAGGATTTCTTCTTGTCGTTCCAAAACCAAAAACACAAGAAAAAGCGGCTAACTGAAGAGCAGGTGGCCATCCTGGAGAAAAGCTTCACCTCTAACAAGAAGCTTGAGCCTGAGAAGAAGTTGCAGCTCTCAAACCAACTGGGTGTGCCTCCAAGACAGATTGCCATTTGGTACCAAAACAAACGAGCTCGCTGGAAGACCCAGCGTCTTGAGCTGGACTATGGTGCCATGCGGTTAAAACTAGAGAAAGCGTTGGCTGAGAAGAAGCAGCTAGAGAAAGATGTGGAAAGGCTTAAGGCAGAGCTGAAGGAAGCCAAAGAGATGCTGCTTAGCGTGAAAGTTGGAGAACACAACTTTAGCCATAGCTCTTTTTGTGAATTTTCGACATCTTGTGAAGAGGGAGGGAGCTCACGAGCGTTCTGGCAAAGTGGCGAGGTTATGCAGATGGAGGAGCTATATGCTTGTTTTATGGGTGCAAATGGGTCAAGCTTGGATTGA 501 0.4711 MEDFFLSFQNQKHKKKRLTEEQVAILEKSFTSNKKLEPEKKLQLSNQLGVPPRQIAIWYQNKRARWKTQRLELDYGAMRLKLEKALAEKKQLEKDVERLKAELKEAKEMLLSVKVGEHNFSHSSFCEFSTSCEEGGSSRAFWQSGEVMQMEELYACFMGANGSSLD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1016 166 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 133 IPR045224 GO:0003700
Glsi14g1016 166 SUPERFAMILY Homeodomain-like 10 78 IPR009057 -
Glsi14g1016 166 ProSiteProfiles 'Homeobox' domain profile. 9 69 IPR001356 GO:0003677
Glsi14g1016 166 Coils Coil 75 116 - -
Glsi14g1016 166 Gene3D - 8 74 - -
Glsi14g1016 166 CDD homeodomain 12 70 IPR001356 GO:0003677
Glsi14g1016 166 ProSitePatterns 'Homeobox' domain signature. 44 67 IPR017970 GO:0000981|GO:0006355
Glsi14g1016 166 SMART HOX_1 11 73 IPR001356 GO:0003677
Glsi14g1016 166 Pfam Homeodomain 13 67 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1016 Glsi-ChrGlsi14 11354808 11355308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1016 12 164 Homeobox Transcription Factor Family AT5G53980 47.403 1.38e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi14g1016 Homeodomain 7.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1016 14 11354808 11355308 Glsi14g1016 14 11354808 11355308 ECH