Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1000 ATGCATCAGATGATGGGTTTGGAAATGGATCAACAAAGGCAAGGATATTTTCATTCTGAACCTTGTATCGTTTTGAGGGGTGCCAACATCTCACAGCCAAACATCCGCACAGTGGTGACTGCTTCAGGGAACACAACTAATGTTGATTCCCACTATTTACCAGATGCTTATGACAATGCTGTGATGTATGGGGTGACACAATTCAATGGCAGTCAGCATCGACACAATCTTGATATGAGTGTTGTGACCTCTGCTAACTTGTATTATTCTGGCATGAATCCTTCGTCTGGTACTGGTGTTTTACCTCTGCCTCTAAATAACCACACCTCTGATCAATTACCAGCTTCAAGCACATTTGCTGTCTCTGGAGTTTCTTCTGATAATTTTGGAAGGTGTGGTGGCTTCATGGATGATGCTAGAGGTCCATACAAAAGAAAAATTGCTGAGGGCATCAGAGGAAATTACCACTATTTTAATGGCTCAGCTAGTTCTTCAGTAGCTCCTCCAAATGCAAGTCACCCTGATGGGGTTGCTATGATGGATACTGCATCCTTTTCCCTGCCTCAATTCAGAGGAAATGGCATTCCGTCACTTGTGGAAGTTGGACCTCATGGTAGTTTGTGGAGCAGGTCTGGTGAGTCTGTTATGGTGCATGAACATAACCATTTGATTCAAGGAAACTATTTAGGGCAGCACTTTCAACCAGCTGCTCCTCCCTGGTTGGACCAGCAGTTGAACAGCACTAGCAGTGATGGACATAATAGGGCCTGGAATCAGTCTCGTTCAATGCCTTTTATGCAAGCTACTGTTAATGGAAGTTCATTAGAGAATGCAAATATGGGTATGCATAGATATCGAGATACAGCTAGCAACAGAAATGGCCTCAGGTTTTCTCATCTTCCTCCTGTCCTCCACCAGCACCATAATTATCATCATCCAACACTGCCCATGCAAGGAGTGAGAGGCCACAATATCAACTTTCATCCTCCAGTAACTGCAGCTACTTATAGAGTTCCAACAAATTCTTCACACAGTTCTGTTATCCCAGCACAGAATGGTTTTGAGATGGGTGCTAGGCATGTTGGTCCTGCACCATCATCAAGCCTACGGATACATCGTCCTCATAGAGGAGTCATGCCCGAGACCACACTCGGACATCGAAGTTTTCCCCCCATGAATTTTCTTAATGTTGATGATGTTGCTTTATTCGATGAAGTGGGAAATTTGGTGGACCATCATAGTGAAATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGTGAGCGGATTGGCAATGTGAGCACTGGTTTATCAGAGGAAACTATCACATTTCAATTGAAGACAAAAAGATATGTGAAATCCTATTCTACAATTAATCTGGAGGAGGCAGCTTCTGAGGATCAGGAAACTGATTCTTGCATAATATGTCAGGATGAATACATGAACAGGGAGATCATTGGAATTCTTCGATGTGGGCACGAGTATCATGCAGATTGCTTGAAGAAATGGTTGCTCGTGAAGAATGTCTGCCCCATATGCAAATCAGAAGCATTGAAACCTGGAAGGAAGGATATGTAG 1593 0.435 MHQMMGLEMDQQRQGYFHSEPCIVLRGANISQPNIRTVVTASGNTTNVDSHYLPDAYDNAVMYGVTQFNGSQHRHNLDMSVVTSANLYYSGMNPSSGTGVLPLPLNNHTSDQLPASSTFAVSGVSSDNFGRCGGFMDDARGPYKRKIAEGIRGNYHYFNGSASSSVAPPNASHPDGVAMMDTASFSLPQFRGNGIPSLVEVGPHGSLWSRSGESVMVHEHNHLIQGNYLGQHFQPAAPPWLDQQLNSTSSDGHNRAWNQSRSMPFMQATVNGSSLENANMGMHRYRDTASNRNGLRFSHLPPVLHQHHNYHHPTLPMQGVRGHNINFHPPVTAATYRVPTNSSHSSVIPAQNGFEMGARHVGPAPSSSLRIHRPHRGVMPETTLGHRSFPPMNFLNVDDVALFDEVGNLVDHHSEMRLDIEDMSYEELLALGERIGNVSTGLSEETITFQLKTKRYVKSYSTINLEEAASEDQETDSCIICQDEYMNREIIGILRCGHEYHADCLKKWLLVKNVCPICKSEALKPGRKDM 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1000 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 523 IPR013083 -
Glsi14g1000 530 ProSiteProfiles Zinc finger RING-type profile. 478 519 IPR001841 -
Glsi14g1000 530 SMART ring_2 478 518 IPR001841 -
Glsi14g1000 530 FunFam E3 ubiquitin ligase BIG BROTHER 438 523 - -
Glsi14g1000 530 CDD RING-H2_RNF24-like 476 522 - -
Glsi14g1000 530 SUPERFAMILY RING/U-box 477 523 - -
Glsi14g1000 530 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 98 523 IPR045191 GO:0061630
Glsi14g1000 530 Pfam Ring finger domain 476 519 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1000 Glsi-ChrGlsi14 11260782 11263055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1000 395 524 C3H Transcription Factor Family AT2G15530 50.000 5.38e-39 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1000 14 11260782 11263055 Glsi14g1000 14 11260782 11263055 ECH