Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0978 ATGGATACCCCCAAGAAGCGAAAGCTTGACGAAAACGGCGTTTTACCTGCAGATTCTGATGTCGGGCTCATCCCTTCCGACGCACGCAAAATCATCGAGCGCTTTAACCCCGACCAACTCCTTAATATCCTCCAGGACGCCGTCGTCCGCCACGGCGATGTCCTCGACGCCGTGCGCTCTATCGCAGATCCCGATATCTCCCAGCGCAAGCTGTTCATCCGTGGACTTGGGTGGGATACCACCACCGATGGCCTCCGCAGTCTCTTTTCCACCTACGGTGAGCTCGAAGAAGCAGTCGTGATTCTCGACAAGGCCACCGGTAAGTCCAAGGGATATGGCTTTGTCACTTTCAAGCACGTCGATGGTGCTTTCCTCGCTCTGAAGGAGCCCAGCAAGAGGATAGATGGTCGCGTCACTGTCACCCAGCTTGCGGCGGCAGGGAATTCGGGGTCTAACACCAACGCGGTGGACATTGCGTTGCGGAAGATATACGTTGCTAATGTGCCGCCTGATCTTCCGGCGGATAAATTACTGGCTCACTTTTCGCTTTACGGGGAGATTGAGGAGGGGCCTTTAGGATTTGATAAGCAGACTGGTAAGTCGAAGGGGTTTGCTCTTTTTGTATACAAGACACCGGAGGCGGCGCAAGCAGCACTAGTGGATCCGGTGAAGATGGTCGAGGGAAGGCAACTGAATTGCAAGCTGGCGATAACAGATGGAAAGCAAGGTAAACGAGGTGGTGCTGGGCCGGTAGGAACTGATGGAGTTCAAGGTCTTGGGAATGCTCATGGGAATGGAATGGGGGGTATGGCTGCGCCGTCTTCAATGCCAGGGTCAGCCTCCGCTGGGTAA 852 0.5493 MDTPKKRKLDENGVLPADSDVGLIPSDARKIIERFNPDQLLNILQDAVVRHGDVLDAVRSIADPDISQRKLFIRGLGWDTTTDGLRSLFSTYGELEEAVVILDKATGKSKGYGFVTFKHVDGAFLALKEPSKRIDGRVTVTQLAAAGNSGSNTNAVDIALRKIYVANVPPDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPEAAQAALVDPVKMVEGRQLNCKLAITDGKQGKRGGAGPVGTDGVQGLGNAHGNGMGGMAAPSSMPGSASAG 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0978 283 MobiDBLite consensus disorder prediction 262 283 - -
Glsi14g0978 283 PANTHER GEO13361P1-RELATED 52 274 - -
Glsi14g0978 283 Gene3D - 155 271 IPR012677 -
Glsi14g0978 283 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Glsi14g0978 283 SUPERFAMILY RNA-binding domain, RBD 153 257 IPR035979 GO:0003676
Glsi14g0978 283 SMART rrm1_1 70 142 IPR000504 GO:0003723
Glsi14g0978 283 SMART rrm1_1 162 234 IPR000504 GO:0003723
Glsi14g0978 283 FunFam UBP1-associated protein 2C isoform A 52 156 - -
Glsi14g0978 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Glsi14g0978 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Glsi14g0978 283 Gene3D - 56 154 IPR012677 -
Glsi14g0978 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
Glsi14g0978 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0978 Glsi-ChrGlsi14 11122647 11123569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0978 157 254 C2H2 Transcription Factor Family AT2G19380 40.000 2.94e-11 61.6