Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0972 ATGTTACCCAGCAAAGAAATAGAGGATTTATGTGATGACAACTTTGAAGGATCAAATGATGAAAGACAGATTTTCACAGAGGTCTTTTTCAGTAAAGACATTTTTCAATATAGTCAGAGGTGTCTTGTTACTGGAGTTATCAACTTTGAATGTGAATCCAGTAAAAACACAATTACATCACTCTATTCTAGTAATGAGAACTCAGTTATAACAAGCCCCTCTTCTTCAAAAGTTACATATCCTGAGGAGGATTGTAATGTAATTCAGCATTCCAAAGAGACTGATCTGGGTTGTATGCCAGAGAGATTCAGTTATGATTACCAGAATGATGAGGATGAGAATGTCAAGCGCAAGAAATTTTCTCTGCATGAACTTCCTTGTTGTAGATCTGATTTAGAAAAGGTTTTGAGTTCAGCAACAGTTTCAAATCAACTTGTTGCTGACATGTCTTGTGCTGCTATAGACTCTAGTAGCAAACCAATTTCATTTCGTTTAGTTGAATCATCGAAGGATGGTGTGATGTCCAGTTGCTATCTGTTGAAGAATAATATATTACGGAATAGACAACCTGCTAAGGATAATGTAGATGTTACAAATTGTAAAAATATCAGTGCAGGTGGGAATGTTGTAAAAGAGGCGGCTGCAACTAAAGTGGTTGCTTCTCCTGTTTCCCAAGAGAGCTTCGCAAACAGACTAGCAGTTACAAGTCCATCAATCACTGTTGCGGAGAAGTCTGGATCTCATTTACATCCAGAGGAAACACCTAAAGAATTTTTATCTTCTAATATGGATATGTCAAATTCATCATTGAAGCCAGACATTAAAAAGGAACCTCGGGCTTTACTGCATTACCTTAGTGTGCAGTTGCTTATGATGGCAGGATGGTCTGTTGAGAAGCGTAAACGACCTTGTAGGCGTCACATAGAGTCAGTTTATAGGACACCAGAGGGAAGGCCAATTCGTGAGTTTATAAAAGCTTGGAGATTATGTGGTCAGCTTTTGTCTGTTGACAAATGTAATTTAATGCATGAAGATTGTAAGGAATGGGATGATATCAGTCAATTCTGGTCTGATCTATCCAGTGCACTGATGTGTGTTGAAAAAGAAATGAACCAGTCAGAGCCTGCTGCTATGTTGGCTTATCAATGGTGTCTTTTGGATCCATTTATTGTAGTCATTTTCATTGATAGAAAGATTGGTGCACTGAAAAAGGGAGAGGTAGTGAAAGCAACTCCAAGTTTAGTTTCTAGTAAGCCTAAGGTGGCATATGCTGCCATTGGTTCAGCTTGGGAGGATACTTCTGAAGCTCCGTTTGATGAGAAACATGACTCAGCTTTTAATTTTGATTCTTCTACAGCCACTGGGACTGCTCTAACATCTTCTGTGCTCAACTACCATGCCTGTTATCAGAAAACTGGTGATGCAAATTTCTCAGGATATGAACAGACAATCAATGGGATAGTGAAACTTCCAAGATATGAATCTGTTAGTATTGGTTATCCGGAAGATATGTACATAGAACACTATGCCGACAGCATAGGAAATCAATGTAGGAAAATGTCTGTGAATCAAAGTAGCAGTCTGGGTCTAGTCTCTTTACCTGATTATCGATTGGATTTTACTGGCACACAGTCAAGTACTTGCACTTTTGATGCTCGTACAACTTCAGGAAATTCTAATCCGGTACTTGGTGGGCTTAAAGTTAACGATTGTCATCCAGGTAAAATGAGAAATTCTGAAAGCTCTGACAAACAGAGCTCAGAAAATTTATTGGAAACAAATAAGAGAGTCAGTAGAGATGTGCCAATGGACAAGTCAGAGGAAAAGGATGCATCAATGGAAGGCCAAGATCAACATCTCCTTGAAAGTTATCTGCAGGAATCCCTAAATGACCATTCACATGGAGTAATCCAGGGCCTGGTCCATCCTCACAACTTAGAGGCTGTTCAGCAGTTTGAATATGGGGAGGAAGAGGGCGGGAAAAGCTCAAGAACCTCTATGTCTGAGACAGATAATACATGTTCTACCCCTGATGTTACTCTGAAAAAGAAGATACGGAGGAAGAGTAAAAAGGTATCTGAAATTAAATTGAGTATGTTATACGAAAGTGACATGATGGGTTCTCAAGTTACTGATCAGGTCCAATTGCTGAATGGCAAGGGATGTGGTTCTCAGTTAGAATTGGAAGAGGTCAAAGAATATTTAGTTGACAGTGCAGAAAATAGAGGACGCTACAGGAAGTTATCATCTGTCAGTGCATTCCAGCAACATATTAGGAAAACAAACTCGAAGATTAGAAAGACTTGTCTCAAGTATGACTCTGTAACTGGAAAAACAAAATCTAGCAAATGCCAGATTGAAGATGATGATCTGTTGGTCTCGGCTATTGTTAAGAAGGAAAATTTCATTTCAAAGACAACTCGAGGTAGTTCGAGAACTAAATCCTGCAAATCAAAAGGTCGGAGAAAGATGAAAAGCCAAAAAGCTCATTGCAGGTTGCTACCAAGGAACTTTGGTAATGGAGGGAAGCACATTAAGGATGGCAAGAGGTATTACCTTGGGGCAAGAACAGTTCTGTCCTGGTTGATTGAGAATGGGATCATATCTTTAAATGATGTAATTCAATACCGAAACTCAAAAGATAATGCTGTCATCAAGGATGGTAGGATTACCAGGGATGGTATTTTATGTAAGTGTTGTGGTAAGTTGCTTACATTATCTGAGTTCAAGTTTCATGCTGGGTTTAGACTGAATCGCCCCTGCTTAAACCTTTTCTTGGAGTCTGGTGAGCCCTTTACATTGTGCCTGCTTCAAGCTTGGTCTACTGAATACAAGGCCAGGAAAAGTGGGAATCAAGCTGTCCAAGCTGACGATGATGATAAAAATGATGACTCGTGTGGACTGTGTGGTGATGGGGGTGAGCTGATATGCTGTGATAACTGTCCATCTGCCTTTCATCTTGCTTGTTTGTCCACTCAGGATATTCCCGAAGGTAACTGGTACTGCACAAACTGCACTTGTCAGATATGTGGGAATTTGGTCAATGATAAAGAAGCTTCAGGTGCTCATGATGCATTGCAATGTTCACAGTGTGAGCATAAATATCATGAGAAATGCCTGAGTAAGCGAGATGAACCAGAAGGGGCAGTTTTTGATGCTTGGTTTTGTGGTGGAAGTTGTCAGGAGATATACACTGGTCTTCAATCTCGGGTTGGGTTTGTTAATCATGTTGCTGATGGCTTCTCATGGATGCTTCTTAGATGCATCCACGATGACCAAAAGGTTCATTCTGCTCAGTGGTTTGCCCTCAAGGCAGTATGCAATACAAAATTAGCTATTGCCCTTACCATCATGGAGGAGTGTTTTTTGTCTATGGTTGATCCAAGAACAGGCATAGACATGATACCTCATATTTTATACAATTGGGGGTCTGATTTTGCTCGCCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAACAGGATGTGTTAATTTCTGTAGCATCTGTCAGGTTGCATGGAACTACAGTTGCAGAGATGCCTCTTATTGCAACTTGCAGTCGGTATCGTCGTCAGGGAATGTGCCGACTCCTCATGAGTGCAATTGAAGAGATGCTAATATCTGTCAAGGTAGCAAAGCTTGTGATAGCAGCCATTCCAGAATTAGCGGAAACATGGACGAAGGGCTTTGGATTCAAACCTGTGGATGACATTGAAAAGCAGAGACTGAACAAAATCAACTTGGTTGTTTTTCCTGGGACAATGTTACTTGAAAAACCCTTGTTCAAAAAGGATAAAATAGAAGGACCGTGTGATCCATCAACCTTGGCAACAGATGACTCGACCAACATAGGTGTCTGTATAAAAGGGATGGCCTTGGCTGAATCATTGCAGCGAGATGTTGGAAACGCTTCTACCAATGAAATTGGTGCTAATTCAGAAACTGAACATGTTTGCAGCGAGAATTACCCAGATTACAGAGTTGGCTGTAAAACCAGCATAGATTACACTCAAACTGTTGACACATCATTAGGAGCCAAAGAAACGAAAGAGTCAAGTACTTTTTTCAGAGAAGAGAAGATCATGAGCTCAGAGAAATATATGGAAGTAAACAATATGCAGGAATTGAGAATGAGCAGCAAAATGGAAATCGCAAGTGAATCCAGTGGTGATTGTTGTACTAACAAAGATGGTACCGAATCAGGAGTAAGAATTATTGAGGACAGAAATATCAAAATAGGTGAAGGTGAGGAAAATCCCTTGCAGGGCCTTTTTTTAAATCTGTCCTGCAACACAGTATTAGGCAGCAATTTTGACGTGGATTCCAATATTGAATCCACAGGAATGTATGATGAAACACAGCTTTCTTTGGAACAGCATTCGCAGGAAGGATGTGCTTTGAATGAATGA 4413 0.4015 MLPSKEIEDLCDDNFEGSNDERQIFTEVFFSKDIFQYSQRCLVTGVINFECESSKNTITSLYSSNENSVITSPSSSKVTYPEEDCNVIQHSKETDLGCMPERFSYDYQNDEDENVKRKKFSLHELPCCRSDLEKVLSSATVSNQLVADMSCAAIDSSSKPISFRLVESSKDGVMSSCYLLKNNILRNRQPAKDNVDVTNCKNISAGGNVVKEAAATKVVASPVSQESFANRLAVTSPSITVAEKSGSHLHPEETPKEFLSSNMDMSNSSLKPDIKKEPRALLHYLSVQLLMMAGWSVEKRKRPCRRHIESVYRTPEGRPIREFIKAWRLCGQLLSVDKCNLMHEDCKEWDDISQFWSDLSSALMCVEKEMNQSEPAAMLAYQWCLLDPFIVVIFIDRKIGALKKGEVVKATPSLVSSKPKVAYAAIGSAWEDTSEAPFDEKHDSAFNFDSSTATGTALTSSVLNYHACYQKTGDANFSGYEQTINGIVKLPRYESVSIGYPEDMYIEHYADSIGNQCRKMSVNQSSSLGLVSLPDYRLDFTGTQSSTCTFDARTTSGNSNPVLGGLKVNDCHPGKMRNSESSDKQSSENLLETNKRVSRDVPMDKSEEKDASMEGQDQHLLESYLQESLNDHSHGVIQGLVHPHNLEAVQQFEYGEEEGGKSSRTSMSETDNTCSTPDVTLKKKIRRKSKKVSEIKLSMLYESDMMGSQVTDQVQLLNGKGCGSQLELEEVKEYLVDSAENRGRYRKLSSVSAFQQHIRKTNSKIRKTCLKYDSVTGKTKSSKCQIEDDDLLVSAIVKKENFISKTTRGSSRTKSCKSKGRRKMKSQKAHCRLLPRNFGNGGKHIKDGKRYYLGARTVLSWLIENGIISLNDVIQYRNSKDNAVIKDGRITRDGILCKCCGKLLTLSEFKFHAGFRLNRPCLNLFLESGEPFTLCLLQAWSTEYKARKSGNQAVQADDDDKNDDSCGLCGDGGELICCDNCPSAFHLACLSTQDIPEGNWYCTNCTCQICGNLVNDKEASGAHDALQCSQCEHKYHEKCLSKRDEPEGAVFDAWFCGGSCQEIYTGLQSRVGFVNHVADGFSWMLLRCIHDDQKVHSAQWFALKAVCNTKLAIALTIMEECFLSMVDPRTGIDMIPHILYNWGSDFARLNFQGFYTVVLEKQDVLISVASVRLHGTTVAEMPLIATCSRYRRQGMCRLLMSAIEEMLISVKVAKLVIAAIPELAETWTKGFGFKPVDDIEKQRLNKINLVVFPGTMLLEKPLFKKDKIEGPCDPSTLATDDSTNIGVCIKGMALAESLQRDVGNASTNEIGANSETEHVCSENYPDYRVGCKTSIDYTQTVDTSLGAKETKESSTFFREEKIMSSEKYMEVNNMQELRMSSKMEIASESSGDCCTNKDGTESGVRIIEDRNIKIGEGEENPLQGLFLNLSCNTVLGSNFDVDSNIESTGMYDETQLSLEQHSQEGCALNE 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0972 1470 MobiDBLite consensus disorder prediction 589 616 - -
Glsi14g0972 1470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 956 1007 IPR013083 -
Glsi14g0972 1470 Pfam PHD-finger 966 1007 IPR019787 -
Glsi14g0972 1470 SUPERFAMILY FYVE/PHD zinc finger 954 1006 IPR011011 -
Glsi14g0972 1470 CDD PHD1_AIRE 966 1005 - -
Glsi14g0972 1470 PANTHER PHD FINGER FAMILY PROTEIN 1 1349 - -
Glsi14g0972 1470 MobiDBLite consensus disorder prediction 245 264 - -
Glsi14g0972 1470 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1152 1239 IPR016181 -
Glsi14g0972 1470 ProSiteProfiles Zinc finger PHD-type profile. 963 1008 IPR019787 -
Glsi14g0972 1470 Pfam Tify domain binding domain 888 938 IPR032308 -
Glsi14g0972 1470 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1101 1259 IPR000182 GO:0016747
Glsi14g0972 1470 MobiDBLite consensus disorder prediction 655 677 - -
Glsi14g0972 1470 SMART PHD_3 1007 1061 IPR001965 -
Glsi14g0972 1470 SMART PHD_3 965 1006 IPR001965 -
Glsi14g0972 1470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1008 1063 IPR013083 -
Glsi14g0972 1470 MobiDBLite consensus disorder prediction 559 616 - -
Glsi14g0972 1470 Gene3D - 1141 1250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0972 Glsi-ChrGlsi14 11093313 11100100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0972 1 411 PHD Transcription Factor Family AT3G14980 35.154 1.63e-53 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi14g0972 TDBD 7.2e-16 No_clan