Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0969 ATGTCGCATTCTGGGAAGCCCGTTTCCGAGCTAGGGTTCGACACTCTCAACGATCGGTTCCGCGACTCGCTGAGCTGCGAGGCTAACAAGCCGGATTTTCGTGAACTCGATCTGGGTTCGCCGGTTTCGCCATTGCGGACTCGTCAGACTGGACCTGCTGCCAGTGGGCTCACCACTACCAGTAGCAGTTCCAGTTCATCTGGATCGGTTTCTGGGCGTAATGGGTACAACCCAGTTGCGAAAAGATCCGATTCTGGAGCGAACAACCACTCGGGCGAGCTGTCCGGCTCCAGCGAGAACAGTCCCACTGCCGCAGAAAGCCTTCGATCTGCAGGGAATGCCAGATGTTTTAAACCAGGCCACGCAAGATCCGATTCCGGGAGCACCCCGCCATTAATCTATTCGGGTCAAAGCTCCTCCGTGAATTCACCGGCGTTGAATGTTCTTCCTACCGGCAATATCTGTCCGTCTGGCAAGATTTTGAAGACCGGTATGGCGGCCAATCGGACTACCAGGACCGACGTTTTGGGCTCCGGTATGGTAAATTATGGTCATGGAAGCATAATGCGGGGCGGTTCTGCATCCAAAGCAGGTGTCGCAGAGGCGATGAGTGCAGTGAATGCAAGGGCAATCAGTGGTGGCGGTGTCAAAGAGCCAGGGAAGAAAGCAGTGCTGAGCGTGGATCCAGAAGAGGTAAAGAGAGCGGGGAACGAGCAGTACAAAAGGGGTCACTTTGCAGAGGCATTGAGTCTGTACGATCGGGCAATTGCATTGTCACCTGCTAACGCTTCCTATCGGAGCAACCGTGCAGCCGCATTGACGGGTTTGGGACGGTTGGCTGAGGCAGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATTCTAGTTATGGAAGAGCCCATCAGCGTTTGGCATCTCTTTTTCTCCGGTTAGGACAAGTTGAGAATGCCAAGATGCACCTCTTTTGTCATGGCCTGCAGCCCGATATTTCCGAGTTGCAGAAGCTGCAATTGGTAGAGAAGCATATCAGCAAATGCACTGATGTCAGGAGGATAGGTGATTGGAAAAGCGTCCTCAGGGAAATTGATGCTGCTGTTACTGCTGGAGCAGACTCTTCTCCACAGCTCTTTATGTGTAGAGCAGAAGCCCTTTTGAAGCTCCACCAGATTGATGATGCCGAATCAATTATGTCAAATATTCCCAAAACGGAATTACATTCTAAATCCTCTTCTCAGGCAAGATTTTTTGGGATACTTTCTGAAGCTTATTCCTTCTTTGTCAGAGCTCAGATTGATATGGCTTTGGGAAGGTTTGAGAATGCAGTTACCGCTGCTGAGAAAGCTGGTCTGATTGATCCCCGAAACATTGAAGTTGCTGTTTTGCTCAACAACGTAAGGATGGTGGCTAGAGCTCGAGCACGTGGCAATGATCTTTTCAAATCAGAAAGGTTCACTGAAGCTTGCTCTGCATACGAGGAAGGTTTGAGGTTGGACCCTTCAAATTCTGTTCTCTATTGCAATAGAGCTGCTTGTTGGTTTAAGCTTGGGCAATGGGAACGATCAATTGAAGATTGTAACCAAGCTTTACAGATCCAGCCAAATTACACAAAAGCCCTTCTACGAAGGGCTGCTTCAAACAGCAAGCTAGAAAGGTGGGCAGAAGCAGTCAAAGATTATGAGATCTTGCGAAGAGAACTTTCAGATGACAATGAAGTTGCTGAAGCTCTTTTTCATGCACAAGTTGCATTAAAAAAATCTCGTGGGGAAGACGTTTATAATTTGAAATTTGGTGGTGAAGTGGAAGAAGTATCTAGTTTTGAGCAGTTTAGAGCTGCAATATCTTCACCAGGTGTGTCTGTTGTCCATTTTGAAATTGAATCTAACTCACAGTGCATGCAAATATCGCCATTTGTGGATACACTTTGCACTCGCTATCCTTCTATTAACTTCCTTAAGGTGGATATTCAAAGAAGCCCAACAGTTGCAACTGCTGAGAACGTTAGGATTGTACCAACTTTCAAGATCTACAAAAATGGAAGTCGATTGAAGGAAATTGTATGCCCTAGTCGTGATATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2106 0.4772 MSHSGKPVSELGFDTLNDRFRDSLSCEANKPDFRELDLGSPVSPLRTRQTGPAASGLTTTSSSSSSSGSVSGRNGYNPVAKRSDSGANNHSGELSGSSENSPTAAESLRSAGNARCFKPGHARSDSGSTPPLIYSGQSSSVNSPALNVLPTGNICPSGKILKTGMAANRTTRTDVLGSGMVNYGHGSIMRGGSASKAGVAEAMSAVNARAISGGGVKEPGKKAVLSVDPEEVKRAGNEQYKRGHFAEALSLYDRAIALSPANASYRSNRAAALTGLGRLAEAVRECEEAVRLDSSYGRAHQRLASLFLRLGQVENAKMHLFCHGLQPDISELQKLQLVEKHISKCTDVRRIGDWKSVLREIDAAVTAGADSSPQLFMCRAEALLKLHQIDDAESIMSNIPKTELHSKSSSQARFFGILSEAYSFFVRAQIDMALGRFENAVTAAEKAGLIDPRNIEVAVLLNNVRMVARARARGNDLFKSERFTEACSAYEEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALQIQPNYTKALLRRAASNSKLERWAEAVKDYEILRRELSDDNEVAEALFHAQVALKKSRGEDVYNLKFGGEVEEVSSFEQFRAAISSPGVSVVHFEIESNSQCMQISPFVDTLCTRYPSINFLKVDIQRSPTVATAENVRIVPTFKIYKNGSRLKEIVCPSRDMLEHSVRHYSF 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0969 701 ProSiteProfiles TPR repeat profile. 229 262 IPR019734 GO:0005515
Glsi14g0969 701 SUPERFAMILY TPR-like 229 457 IPR011990 GO:0005515
Glsi14g0969 701 MobiDBLite consensus disorder prediction 128 143 - -
Glsi14g0969 701 SMART tpr_5 229 262 IPR019734 GO:0005515
Glsi14g0969 701 SMART tpr_5 421 454 IPR019734 GO:0005515
Glsi14g0969 701 SMART tpr_5 467 500 IPR019734 GO:0005515
Glsi14g0969 701 SMART tpr_5 263 296 IPR019734 GO:0005515
Glsi14g0969 701 SMART tpr_5 501 534 IPR019734 GO:0005515
Glsi14g0969 701 SMART tpr_5 535 568 IPR019734 GO:0005515
Glsi14g0969 701 Gene3D Tetratricopeptide repeat domain 227 587 IPR011990 GO:0005515
Glsi14g0969 701 Coils Coil 548 575 - -
Glsi14g0969 701 CDD TRX_family 606 693 - -
Glsi14g0969 701 MobiDBLite consensus disorder prediction 26 143 - -
Glsi14g0969 701 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 698 IPR044534 -
Glsi14g0969 701 SUPERFAMILY Thioredoxin-like 504 699 IPR036249 -
Glsi14g0969 701 ProSiteProfiles TPR repeat profile. 501 534 IPR019734 GO:0005515
Glsi14g0969 701 FunFam TPR repeat-containing thioredoxin TTL4 593 700 - -
Glsi14g0969 701 Gene3D Glutaredoxin 594 700 - -
Glsi14g0969 701 Pfam TPR repeat 236 277 - -
Glsi14g0969 701 Pfam Tetratricopeptide repeat 503 534 IPR001440 GO:0005515
Glsi14g0969 701 Pfam Thioredoxin 606 691 IPR013766 -
Glsi14g0969 701 MobiDBLite consensus disorder prediction 43 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0969 Glsi-ChrGlsi14 11073196 11076272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0969 466 611 U-box Gene Family AT3G07370 28.415 3.45e-10 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0969 14 11073196 11076272 Glsi04g1248 04 12790390 12793449 CCT
Glsi14g0969 14 11073196 11076272 Glsi14g0969 14 11073196 11076272 ECH