Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0953 ATGTCTCTGATGAAAGTTTTCCGTTCTCGTAGATTCTCCAGATCGTTCAAGGAAATTGGATCAATCGAGGAAGATGAGCGCCGGAACGGACTTAGTGGAGACGCTGCTGAGTCCGGTGAGGCCCCGGCGTACGGCAATGCATGGTCCACCATGCTGCCGGAGCTCCTCGGGGAGATCATACAGCGCTTAGAAGCCAGCGAGGAGCAGTGGCCCCATCGCCAAAACGTTGTCGCTTGTGCCTGCGTCTGCAAGAGGTGGAGGGATATGACCCGAGAGATTGTACGGTCTCCTTCTCAGACCGGCAAAATCACTTTCCCTTCTTGCCTTAAACAGCCAGGACCACGTGATATTCCCCACCGATGTCTTATAAAGCGGAACAAGAAGACTTCAACATTTTACCTATATCTTGCCCTTACACCATCATCATTCACAGATAAAGGGAAGTTTCTCTTAGCAGCTAGGAGATATAGGCGTGGTGCTTGTGCTGAATATATCATATCACTTGATGCTGATGACTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGAACCAACTTCACAATCTATGACAGCCAGCCACCCCATAGTGGCGCAAAGCCATCAAGCAGCAGAGCCAGCCGTCGTTTTGCCAGCAAGCAGATTAGCCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCTTACAAGTTCAACCTTTTGAAATCAAGGGGGCCAAGGAGGATGGCTTGCCAGCTGAATTGCCCCATTCCATTGTCAGGAGAAAGTTCAGATAGCAATTATCTGGATGGCCATAAGATGAACAATATAGAGAATTCTGCTTTTGGCTACTCAATGTTGAAAAACAAAGCTCCAAGATGGCACGAGCATTTGCAGTGCTGGTGCTTGAATTTTCATGGCCGTGTGACCATAGCATCGGTGAAGAACTTTCAGCTGGTTGCTACCGTGGACCAGAGCCAGCCAGGTGGGAAAGGAGATGAGGAAACGGTTCTCCTCCAATTTGGGAAAGTAGGGGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCTGCCTTCCAGGCCTTTGCCATTTGCTTAACCAGCTTTGGCACTAAACTGGCGTGTGAGTAA 1137 0.4881 MSLMKVFRSRRFSRSFKEIGSIEEDERRNGLSGDAAESGEAPAYGNAWSTMLPELLGEIIQRLEASEEQWPHRQNVVACACVCKRWRDMTREIVRSPSQTGKITFPSCLKQPGPRDIPHRCLIKRNKKTSTFYLYLALTPSSFTDKGKFLLAARRYRRGACAEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSSRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMACQLNCPIPLSGESSDSNYLDGHKMNNIENSAFGYSMLKNKAPRWHEHLQCWCLNFHGRVTIASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0953 378 CDD F-box_AtTLP-like 48 92 - -
Glsi14g0953 378 ProSitePatterns Tub family signature 1. 306 319 IPR018066 -
Glsi14g0953 378 SUPERFAMILY Tubby C-terminal domain-like 97 378 IPR025659 -
Glsi14g0953 378 PANTHER TUBBY-RELATED 44 376 - -
Glsi14g0953 378 ProSitePatterns Tub family signature 2. 363 378 IPR018066 -
Glsi14g0953 378 Gene3D Tubby Protein; Chain A 104 378 IPR025659 -
Glsi14g0953 378 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Glsi14g0953 378 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Glsi14g0953 378 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Glsi14g0953 378 PRINTS Tubby superfamily signature 288 305 IPR000007 -
Glsi14g0953 378 PRINTS Tubby superfamily signature 335 354 IPR000007 -
Glsi14g0953 378 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Glsi14g0953 378 PRINTS Tubby superfamily signature 356 378 IPR000007 -
Glsi14g0953 378 SUPERFAMILY F-box domain 48 91 IPR036047 GO:0005515
Glsi14g0953 378 Pfam F-box domain 53 95 IPR001810 GO:0005515
Glsi14g0953 378 Pfam Tub family 109 373 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0953 Glsi-ChrGlsi14 10981737 10986041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0953 1 378 TUB Transcription Factor Family AT1G53320 70.437 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi14g0953 Tub 4.4e-101 CL0395