Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0900 ATGAGGAAGTCTCTGCTTTTAGCCTTTTACATCACCATATGCTGCCTTGCTTTTGTCATATCCAAGATTATTATCTCAATTCTCCTCTACAAAAGGTGGAAAAGAAAGCACATTATTTATGAAGAAGGATATCCAGGTGGGAAGATGGTAATATTTAGGTCTTCAGTGCTGCAATCGCTCACGTCTGATATGGTCTTAAAGAAAACACTGAAACTGAGTAACAAGGACATCATTGGCTCTGGCGGGTATGGGACAGTTTATAAACTCAAAATAGATGACTCCACAGACTTTGCCGTGAAAAGGCTCAACAAAGGAACTACAGATAGAGAGGGAGGTTTTCAGAGAGAGTTGGAAGCAATGGTAGACATAAAGCACCGCAATATTGTGAATCTTCATGGATACTACACTGGCCCACACTACAACCTTCTCATATATGAGCTAATGCCTAATGGAAGTTTGGATTCTTCTCTACATGGAAGATCAATGGACAAGGTGGTTTTGGATTGGCCATCAAGATACAGAATAGCTATAGGTGCTGCTAGAGGAATATCATATCTTCATCATGATTGCATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAATATATTGCTGGATCAAAACATGGAGGCTCGAGTTTCTGATTTTGGATTAGCCACATTGATGGAACCAAATAAAACTCATGTGACAACAATCGTGGCCGGAACTTTTGGATACTTACCCCCCGAATATTTTGATACAGGAAGAGCAACAGTAAAAGGGGATGTTTATAGCTTTGGAGTTGTGCTATTGGAGCTTTTAACTGGGAAAAAACCCTGGGATGAAGCATTTATAGGAGAGGGAGCCAAGCTTGTCACATGGGTGAAGGCTGTTGTTCGAGACAAGAAGGAGGAGTTGGTTCTTGACAACAGCTTAGGGTCTTGCCCCATACAAGAGGTTAACAATGTGTTCAACATTGCAATGAAGTGCCTTGAGTCAGATCCCTTGAAGAGGCCAACCATGGCTGAGGTTGTCAACTTGCTCGAGCAAACAAAATCAGACAAACTTTTTACAGCTTCCTGA 1065 0.415 MRKSLLLAFYITICCLAFVISKIIISILLYKRWKRKHIIYEEGYPGGKMVIFRSSVLQSLTSDMVLKKTLKLSNKDIIGSGGYGTVYKLKIDDSTDFAVKRLNKGTTDREGGFQRELEAMVDIKHRNIVNLHGYYTGPHYNLLIYELMPNGSLDSSLHGRSMDKVVLDWPSRYRIAIGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMEARVSDFGLATLMEPNKTHVTTIVAGTFGYLPPEYFDTGRATVKGDVYSFGVVLLELLTGKKPWDEAFIGEGAKLVTWVKAVVRDKKEELVLDNSLGSCPIQEVNNVFNIAMKCLESDPLKRPTMAEVVNLLEQTKSDKLFTAS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0900 354 Pfam Protein kinase domain 74 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0900 354 SMART serkin_6 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0900 354 Gene3D Transferase(Phosphotransferase) domain 1 148 352 - -
Glsi14g0900 354 SUPERFAMILY Protein kinase-like (PK-like) 54 344 IPR011009 -
Glsi14g0900 354 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Glsi14g0900 354 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 9 347 - -
Glsi14g0900 354 ProSiteProfiles Protein kinase domain profile. 72 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi14g0900 354 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 353 - -
Glsi14g0900 354 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
Glsi14g0900 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Glsi14g0900 354 Gene3D Phosphorylase Kinase; domain 1 48 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0900 Glsi-ChrGlsi14 10506399 10508721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0900 3 344 Receptor kinase-like Gene Family AT2G35620 47.536 5.37e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Glsi14g0900 Pkinase 1.3e-48 CL0016