Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0801 ATGGCAACACTGCTGAATACGGTGTCTCCACCCGCAACCCTATCATCAAAAACAAAAGGAAAAGAAAAGGGTTGTTGTAGTAGCTTATATTCCCAGATTCTAAACATCCATACCTCTTCCCTCAAGAAGGGTTTTTCCAGAGTTTTGGCGTCTGCCCAGATTACCAGTTCTCCAAAAGATGTTTTTACTCTGCCCAACTGGAGGGCCGGGAAGAATGACCCAAAAAGCAAGGAGCTCAGACTTAATGATGCATTTCTTCATTTAGAGTATATGGTGGGAAAAGGCCACAAGCCTGATGTAACTCAAGCAACAAAGCTCTTGTATGATCTTTGCAAGTCGAATAAATTTAGGAAAGCTGTTAGAGTGATGGAGATGATGGTGGGTTCGGGTGTTATACCTGATGCAGCTGCCTATACATACTTGGTGAATCATTTGTGCAAGAGAGGCAGTATTGGGTATGCAATGCAGTTGGTTGAAAAGATGGAGGAACATGGCTTTCCAACTAATTCTATTACCTATAACACTCTAGTTAAAGGGCTTTGCACGCAGGGAAATTTAAATCAGAGCTTGCAGTTTTTAGATAGATTAACAAAGAAGGGGTTGGTCCCAAATGCTTTCACATATTCATTCTTACTTGAAGCTGCTTATAAGGAAAGGGGAGTAGATGAAGCCATGAAACTTTTGGATGAGATAATTGCCAAGGGTGGGGAACGTAATTTAATTAGTTACAATGTTTTGTTAACTGGATTGTGCAAGGAAGGTAGAACTGAAGAAGCTATTAAGCTTTTCAGGGAATTGCCTGCAAAGGGGTTTATTCCTAGTGTTGTGAGTTATAACATTTTGCTGAGGAATTTGTGCTATGAAGGGCGGTGGGAGGAGGCAAATGAGCTGTTAGCAGAGATGTATGGAGAGGAACGGTCTCCCTCTGCGGTTACGTACAACATATTAATTACCTCTCTTTGCCACCATGGAAGAACAGAACATGCTTTCAAGGTTTTAAATGAAATGACAAGGAGTGGATTCAAGGCAACTGCCACTAGCTATAATCCAATTATTGCCCTTCTCTGCAAGGAAGGGAAAGTGGATCTTGTAGTTCAGTGTCTAGACCAAATGATTTATCGGCACTGTAATCCTAATGACGGAACATACAATGCTATTGCTATGCTTTGTGAGGGAGGAAAAGTGCAAGAGGCATTCTCCATAATTCAAAGCTTGGGTAATAAACAAAACTCCTCTATGCATGATTTCTACAAAAGTGTAATTTGGAGCATGTGTAGGAAAGGGAACACATATCCAGCCGTTCAGCTATTATATGAAATGACAAAGTATGGATTTACACCAGATTCTTATACTTACTCATCTTTGGTAAGAGGAATATGTAGGGAAGGAATGTTGGATGAAGCCATTGAGATATTCAGGATTTTGGAAGAATATGGGTACAAGCCTGATACTGACAACTATAATGCACTTATACTTGGATTTTGCAAATCCCTGAGAACAGACTTGTCAATGGAGATATTCGAGATGATGATTGATAAAGGTTGTACGCCGAATGAGACAACATATACCATTCTCATTGAAGGGCTTGTTTTTGAAGAAGAAATGGATATGGCAGTCATGATTTTGAAAGAGTTATATTTAAAGGAGGTTCTGAGCCAAAGTACTGTCGAGAGAATTATTATGCAGTATGACCTCAAGGATTTAGCAGTGTAA 1713 0.3993 MATLLNTVSPPATLSSKTKGKEKGCCSSLYSQILNIHTSSLKKGFSRVLASAQITSSPKDVFTLPNWRAGKNDPKSKELRLNDAFLHLEYMVGKGHKPDVTQATKLLYDLCKSNKFRKAVRVMEMMVGSGVIPDAAAYTYLVNHLCKRGSIGYAMQLVEKMEEHGFPTNSITYNTLVKGLCTQGNLNQSLQFLDRLTKKGLVPNAFTYSFLLEAAYKERGVDEAMKLLDEIIAKGGERNLISYNVLLTGLCKEGRTEEAIKLFRELPAKGFIPSVVSYNILLRNLCYEGRWEEANELLAEMYGEERSPSAVTYNILITSLCHHGRTEHAFKVLNEMTRSGFKATATSYNPIIALLCKEGKVDLVVQCLDQMIYRHCNPNDGTYNAIAMLCEGGKVQEAFSIIQSLGNKQNSSMHDFYKSVIWSMCRKGNTYPAVQLLYEMTKYGFTPDSYTYSSLVRGICREGMLDEAIEIFRILEEYGYKPDTDNYNALILGFCKSLRTDLSMEIFEMMIDKGCTPNETTYTILIEGLVFEEEMDMAVMILKELYLKEVLSQSTVERIIMQYDLKDLAV 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0801 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Glsi14g0801 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Glsi14g0801 570 SUPERFAMILY HCP-like 85 265 - -
Glsi14g0801 570 Gene3D Tetratricopeptide repeat domain 75 184 IPR011990 GO:0005515
Glsi14g0801 570 Gene3D Tetratricopeptide repeat domain 185 287 IPR011990 GO:0005515
Glsi14g0801 570 Gene3D Tetratricopeptide repeat domain 288 400 IPR011990 GO:0005515
Glsi14g0801 570 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 80 301 - -
Glsi14g0801 570 Pfam PPR repeat family 482 529 IPR002885 -
Glsi14g0801 570 Pfam PPR repeat family 308 349 IPR002885 -
Glsi14g0801 570 Pfam PPR repeat family 133 182 IPR002885 -
Glsi14g0801 570 Pfam PPR repeat family 239 286 IPR002885 -
Glsi14g0801 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Glsi14g0801 570 Pfam PPR repeat 206 235 IPR002885 -
Glsi14g0801 570 Pfam PPR repeat 110 131 IPR002885 -
Glsi14g0801 570 MobiDBLite consensus disorder prediction 1 21 - -
Glsi14g0801 570 Gene3D Tetratricopeptide repeat domain 407 475 IPR011990 GO:0005515
Glsi14g0801 570 Gene3D Tetratricopeptide repeat domain 476 548 IPR011990 GO:0005515
Glsi14g0801 570 Pfam PPR repeat 444 473 IPR002885 -
Glsi14g0801 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Glsi14g0801 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Glsi14g0801 570 SUPERFAMILY HCP-like 215 515 - -
Glsi14g0801 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Glsi14g0801 570 NCBIfam pentatricopeptide repeat 487 519 IPR002885 -
Glsi14g0801 570 NCBIfam pentatricopeptide repeat 171 205 IPR002885 -
Glsi14g0801 570 NCBIfam pentatricopeptide repeat 347 379 IPR002885 -
Glsi14g0801 570 NCBIfam pentatricopeptide repeat 110 135 IPR002885 -
Glsi14g0801 570 NCBIfam pentatricopeptide repeat 137 167 IPR002885 -
Glsi14g0801 570 NCBIfam pentatricopeptide repeat 276 309 IPR002885 -
Glsi14g0801 570 NCBIfam pentatricopeptide repeat 450 484 IPR002885 -
Glsi14g0801 570 NCBIfam pentatricopeptide repeat 241 274 IPR002885 -
Glsi14g0801 570 NCBIfam pentatricopeptide repeat 311 344 IPR002885 -
Glsi14g0801 570 Coils Coil 570 570 - -
Glsi14g0801 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Glsi14g0801 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Glsi14g0801 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Glsi14g0801 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0801 Glsi-ChrGlsi14 9268766 9270478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0801 117 567 Glycosyltransferase AT1G05670 24.724 1.58e-46 172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0801 14 9268766 9270478 Glsi14g0801 14 9268766 9270478 ECH