Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0792 ATGGCGAAACCTGGGCGAGGTCGTCGCTCACCACCGTCTGGTTCCGTTTCGGGCTCTTCCTCTCGCTCTAGATCCTCCTCTGCCTCCGGTTCCCGCTCCAGCTCTCGCTCTCGTTCGCTGTCTCGCTCTCTGTCTCGCTCCAGATCCTTTTCTTCGTCCTCCTCTCCGTCTCGCAGTTCCAAAAGCCGAAGCCCCCCTCCTCAAAGGAAAAAAAGTCCTGTTGAAACAGCTAGGCGTGGTAGATCTCCTCCACCCCAATCTAAAAGGACTTCTCCGCCCCCAAGGAAACCTTCTCCTGTTCGTGAATCACTTGTTCTTCACATAGACAAACTAAGCAGGAATGTCCATGAGGGCCATTTGAAAGAAATATTCAGTAACTTTGGTGAGGTTGTAAATGTGGAGTTGGCAATGGACCGAACTGTTAACCTTCCTAAAGGATATGGATATGTGGAATTCAAGACAAGAGGGGATGCTGAAAAAGCCTTACTGTACATGGACGGTGCTCAGATAGATGGAAACACCATTAAGGCGAGATTTACCCTACCTCCAAGACAGAAGGTTTCACCACCCCCAAAGGCTTCTGCTCTTGCTCCAAAGAGAGATGCCCCCAGGACTGATAATGCTGGTGCCGATGTTGAAAAGGATGGGCCAAGGCGGCAAAGAGAATCTTCTCCTCGGAGAAGACCTCCTTCGCCACGAAGGAGATCTCCTGTCCCTCGAAGAGTTGGATCTCCTAGACGATTGGATTCTCCTGTTCGTCGTCGAGTGGACTCTCCTTATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCTGTGTCTCCTGCAAGAGGCCGTTCTCCGTCTCCACCAAGGCGCCTTAGGTCCCCTGTGAGAGTTTCACCTAGAAGAATCCGTGGAAGTCCGGCTCGCAGACGTTCTCCTCCTCCTCCTCTAAGGCGCCGTTCACCACCACCTAGACGAGTTCGTAGTCCTCCTAGAAGGTCTCCAATCAACCGTAGACGTAGTCGCTCTCCAATACGTAGGGCTGCACGCTCACGTTCGAGATCCTTCTCACCACGAAGAGGTCGACCACCTGTGAGACGTGGAAGGTCATCATCCTATTCTGATTCACCAAGTCCACGCAAGGTATCCCGGAGATCAAGGAGTCGCAGTCCGAGAAGGCCTTTGAGAGGAAGAGGCAGTAGTAACAGCAGCAGCAGCAGCTCACCACCCCCACCTCGCAAACCATAA 1230 0.5301 MAKPGRGRRSPPSGSVSGSSSRSRSSSASGSRSSSRSRSLSRSLSRSRSFSSSSSPSRSSKSRSPPPQRKKSPVETARRGRSPPPQSKRTSPPPRKPSPVRESLVLHIDKLSRNVHEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNTIKARFTLPPRQKVSPPPKASALAPKRDAPRTDNAGADVEKDGPRRQRESSPRRRPPSPRRRSPVPRRVGSPRRLDSPVRRRVDSPYRRGDTPPRRRPVSPARGRSPSPPRRLRSPVRVSPRRIRGSPARRRSPPPPLRRRSPPPRRVRSPPRRSPINRRRSRSPIRRAARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSRSRSPRRPLRGRGSSNSSSSSSPPPPRKP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0792 409 MobiDBLite consensus disorder prediction 1 101 - -
Glsi14g0792 409 MobiDBLite consensus disorder prediction 204 229 - -
Glsi14g0792 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Glsi14g0792 409 CDD RRM_RNPS1 106 178 IPR034201 -
Glsi14g0792 409 SMART rrm1_1 105 178 IPR000504 GO:0003723
Glsi14g0792 409 MobiDBLite consensus disorder prediction 180 409 - -
Glsi14g0792 409 MobiDBLite consensus disorder prediction 12 69 - -
Glsi14g0792 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 176 IPR000504 GO:0003723
Glsi14g0792 409 Gene3D - 13 188 IPR012677 -
Glsi14g0792 409 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 261 - -
Glsi14g0792 409 MobiDBLite consensus disorder prediction 289 360 - -
Glsi14g0792 409 FunFam Serine/arginine-rich splicing factor SR45 3 189 - -
Glsi14g0792 409 MobiDBLite consensus disorder prediction 246 271 - -
Glsi14g0792 409 SUPERFAMILY RNA-binding domain, RBD 90 189 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0792 Glsi-ChrGlsi14 9199048 9204999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0792 106 179 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.93e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0792 14 9199048 9204999 Glsi14g0792 14 9199048 9204999 ECH