Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0747 ATGAAGGAGGACATATTGTACAAATCCCACAAGGAACCCCATTACACCCTACAGTACCCCACCCTACTACCTCTACCTCTACGCGGCAACAAGTTCCCTCTCTTTCTCCTTTGTCTTCCTTTTCCTTTCTCCGGGTCTCTCACTCGATCAACAGGAAGCCACAGGAACAAGATGCAGATCTTCGTTAAAACTTTGACCGGAAAGACCATTACACTCGAGGTTGAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGCACTCTTGCTGATTATAACATTCAAAAGGAATCAACACTTCATTTGGTTTTGAGGCTCAGGGGAGGTACCATGATCAAAGTGAAGACTCTTACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACCATTGACCGGATCAAGGAACGTGTTGAAGAGAAAGAGGGAATTCCACCTGTGCAGCAGAGGCTCATATATGCTGGGAAGCAGCTTGCAGATGACAAAACAGCAAAAGAGTACAACATTGAAGGTGGTTCTGTGCTTCACTTGGTGCTAGCACTGAGGGGTGGTAGTCATTGCTAG 639 0.4617 MKEDILYKSHKEPHYTLQYPTLLPLPLRGNKFPLFLLCLPFPFSGSLTRSTGSHRNKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGSHC 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0747 212 PRINTS Ubiquitin signature 89 109 IPR019956 -
Glsi14g0747 212 PRINTS Ubiquitin signature 110 131 IPR019956 -
Glsi14g0747 212 PRINTS Ubiquitin signature 68 88 IPR019956 -
Glsi14g0747 212 SUPERFAMILY Ubiquitin-like 136 209 IPR029071 -
Glsi14g0747 212 FunFam NEDD8 protein 134 211 - -
Glsi14g0747 212 ProSiteProfiles Ubiquitin domain profile. 58 133 IPR000626 GO:0005515
Glsi14g0747 212 PANTHER UBIQUITIN 58 135 - -
Glsi14g0747 212 Pfam Ubiquitin family 60 131 IPR000626 GO:0005515
Glsi14g0747 212 Pfam Ubiquitin family 136 207 IPR000626 GO:0005515
Glsi14g0747 212 Gene3D - 135 212 - -
Glsi14g0747 212 Gene3D - 51 134 - -
Glsi14g0747 212 CDD Ubl_NEDD8 136 209 IPR038738 -
Glsi14g0747 212 SUPERFAMILY Ubiquitin-like 52 133 IPR029071 -
Glsi14g0747 212 FunFam Polyubiquitin 3 58 133 - -
Glsi14g0747 212 ProSitePatterns Ubiquitin domain signature. 84 109 IPR019954 -
Glsi14g0747 212 CDD Ubl_ubiquitin 58 133 - -
Glsi14g0747 212 ProSitePatterns Ubiquitin domain signature. 160 185 IPR019954 -
Glsi14g0747 212 SMART ubq_7 58 129 IPR000626 GO:0005515
Glsi14g0747 212 SMART ubq_7 134 205 IPR000626 GO:0005515
Glsi14g0747 212 ProSiteProfiles Ubiquitin domain profile. 134 209 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0747 Glsi-ChrGlsi14 8323413 8327087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0747 136 209 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 62.162 2.41e-26 97.1