Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0740 ATGGAAGACAATGAAGAAGTCAAGACGTTTAAGGATTTGGGCTTATCTGAGCCACTGGTGGAAGCTTGTGAAAAGCTGGGTTGGAAAATTCCATTAAAGATACAGGCTGAAGCGATTCCTCTTGCACTGGAAGGAAAAGATGTGATTGGGCTTGCACAAACAGGCTCTGGTAAAACTGGCGCTTTTGCTCTTCCCATATTGCATGCCCTTTTAGACGCACCACGGCCGAAAGATTTTTTTGCTTGTGTGTTGTCTCCCACGAGAGAGCTTGCTATTCAAATCTCCGAGCAGTTTGAAGCTTTGGGTTCTGAAATTGGTGTGAAGTGTGCTGTGCTCGTTGGAGGAATTGACATGGTGCATCAGACTATCAAGATAGCGAAGCAGCCTCATATTATTGTTGGGACGCCTGGACGTGTTTTAGATCACCTAAAAAACACTAAAGGTTTTTCTCTTAATAGATTGAAATATCTGGTCTTAGATGAGGCTGACAGGCTGTTAAATGAGGACTTTGAGGAATCACTTAATGAAATTTTACAAGCTATCCCTCAACAACGAAGAACATTTCTGTTTTCTGCTACGATGACTAAGAAGGTCCAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCCGTGAAGATTGAAGCATCTTCCAAATATTCTACTGTTGACACACTGAAGCAGCAGTATTGCTTTTTGCCTGCCAAGCACAAGGATTGCTTCCTTGTATATATTCTGACTGAAATGGCTGGAAGTACATCAATGGTTTTTACTCGCACATGTGATGCGACTCAGCTCCTGGCTTTGACACTTAGAAATCTTGGTCTGAAAGCCATCCCAATTAACGGTCATATGAGCCAGTCGAAGAGACTTGGAGCCTTGAATAAGTTCAAGTCTGGAGATTGCAATATTCTTCTTTGTACTGATGTGGCAAGTAGAGGTCTGGACATTCCTGCGGTAGATGTGGTTATCAACTATGATATCCCCACAAACTCCAAGGATTATATACATCGTGTGGGAAGAACTGCTCGTGCAGGGCGATCTGGGGTTGCCATTTCCCTTGTGAATCAATACGAGCTGGAGTGGTACATTCAGATAGAGAAGCTTATAGGCAAGAAGTTGCCAGAGTATCCTGCACAAGAAGAGGAAGTCTTGCTTCTGGAAGAGCGTGTTAGCGAGGCCAAAAGATTATCAGTAATGAAAATGAAGGAAAGTGGAGGGAAGAGGAGACGGAAGGGCGACGACGGAGACTATGATGAGGAAGATATGGACAAATATTTAGGTCTCAAGAATGGAAAATCGTCCAAGAAGTTTAAAAGGAAATGA 1320 0.4311 MEDNEEVKTFKDLGLSEPLVEACEKLGWKIPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLDAPRPKDFFACVLSPTRELAIQISEQFEALGSEIGVKCAVLVGGIDMVHQTIKIAKQPHIIVGTPGRVLDHLKNTKGFSLNRLKYLVLDEADRLLNEDFEESLNEILQAIPQQRRTFLFSATMTKKVQKLQRVCLRNPVKIEASSKYSTVDTLKQQYCFLPAKHKDCFLVYILTEMAGSTSMVFTRTCDATQLLALTLRNLGLKAIPINGHMSQSKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEVLLLEERVSEAKRLSVMKMKESGGKRRRKGDDGDYDEEDMDKYLGLKNGKSSKKFKRK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0740 439 Pfam Helicase conserved C-terminal domain 239 344 IPR001650 -
Glsi14g0740 439 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 158 166 IPR000629 -
Glsi14g0740 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 365 IPR027417 -
Glsi14g0740 439 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 8 36 IPR014014 GO:0003724
Glsi14g0740 439 SMART helicmild6 263 344 IPR001650 -
Glsi14g0740 439 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 223 383 IPR001650 -
Glsi14g0740 439 Gene3D - 1 217 IPR027417 -
Glsi14g0740 439 CDD DEADc_DDX47 9 213 IPR044765 GO:0005524
Glsi14g0740 439 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 397 - -
Glsi14g0740 439 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 212 IPR014001 -
Glsi14g0740 439 Pfam DEAD/DEAH box helicase 33 201 IPR011545 GO:0003676|GO:0005524
Glsi14g0740 439 SMART ultradead3 27 227 IPR014001 -
Glsi14g0740 439 CDD SF2_C_DEAD 224 353 - -
Glsi14g0740 439 Gene3D - 218 390 IPR027417 -
Glsi14g0740 439 MobiDBLite consensus disorder prediction 396 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0740 Glsi-ChrGlsi14 8272820 8280968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0740 5 376 Eukaryotic Initiation Factors Gene Family AT3G19760 31.383 5.72e-64 209