Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0721 ATGTCGGTGCTGATTGTGACGAGCTTAGGAGACATAGTGGTCGATTTGAACACCGATAAATGTCCCTTAACAAGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTCTCTATTTCACACAGTTCAGAAAGATTTCACTGCTCAAACTGGTGATCCAACTGGAATCGGGAGTGGTGGTGATTCAATCTACAAATTTCTCTATGGTGATCAAGCTCGCTTTTTTAGTGATGAAATTCATATTGATTTGAAGCATTCTAAGACTGGTACAGTTGCCATGGCTAGTGCTGGAGAGAACCTGAATGCTTCCCAGTTCTACTTCACTCTGCGTGATAATCTTGATTACCTTGATGGAAAGCACACTGTTTTTGGCGAGATAGCTGAAGGACTTGAGACTTTGACTAGAATAAATGAGGCTTATGTGGATGAGAAGGGCAGACCTTATAAAAATATCAGAATCAAGCACACATACATTCTAGATGATCCTTTTGATGATCCTCCTCAGCTCACTGAGTTGATTCCTGAAGCTTCACCAGAAGGAAAGCCAAAAGATGAGATTGTTGATGAGGTGCGGCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAGATCCAACAGAGCTTGAGGAGATTATTAGAACAAAGGATGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGAGATATTCCTGATGCTGAGATCAAGCCTCCCGACAATGTGCTATTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACTATATTTTCACGCTTTGGGACTGTATCATCGGCTGAAATCATCCGTGATCAGAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACCAACAGTCATGTGAACAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATAGAAGGATACATGTGGATTTTAGTCAGAGTGTGGCAAAACTGTGGTCACAATATAGACGCAAAGATCAAATGGGTAAAGGTAAGGGTTGCTTCAAATGCGGTTCTCCAGATCATATGGCCAAGGATTGCACTGAGGATGCTAAGAATCAACAAACTGCAAAATACATATTGAAGGATGATAATGCTCAACGTGGTGGAGAGAATGCAAGGTATGAAATGGTTTTTGATGGAGATAATGCAGAAAGTCCAAGGCGAGGAACGAAACACAGTGGGCATGATGGGAATGATCTAGTTGAAAGAAGTATAAGCAAGCAAAGTTCCAAAGATTATATACATAGGGATCGCAGGGATCAAGAGATGGTAGGCTCAAACAACAGAGACAGGTATAGTGATAGAAGCAAGGGACACAGGGAAAATAATGATAATAAAGCACGATCTGACAGAAGCACAAGAGATGTGGATTCCCATGCAGAGAGGAAAGATAAAGAAAAGCATATCGAAAGACAGAGAGATGACTGGAAAGATGATCGAGACTCCAGAAAGAGAAATTTAGATGATAGCAATGTTGAAAGACGGACCAGTGGAGATTATAGGAAAACAGATTCTAGACATGTGGAGAGAAGGGATGATAGGGAGTATAGCAGAGATGGAGGGAAGAGAAAGAAGACTGGTGCAGCTGATGATAGCCATGAAGACAGGATGGATGACCGAGATTATAGGAAGAGACGTGAAGACAGAGGCCGGCAAGATACAAAGAATGATTCTAGAGGAAGAAAAAGGAGTTCAGATGAAGAGGATTACAGACATCGAAGGGAAGAACATGGACATAGAAGACGAGACATTGAATTCAATGACAATATTCATAGGAGGCATCATAGTGACAGGAGATGA 1824 0.4106 MSVLIVTSLGDIVVDLNTDKCPLTSKNFLKLCKIKYYNGSLFHTVQKDFTAQTGDPTGIGSGGDSIYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYFTLRDNLDYLDGKHTVFGEIAEGLETLTRINEAYVDEKGRPYKNIRIKHTYILDDPFDDPPQLTELIPEASPEGKPKDEIVDEVRLEDDWVPMDEQLDPTELEEIIRTKDAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDQKTGDSLCYAFIEFEDQQSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQMGKGKGCFKCGSPDHMAKDCTEDAKNQQTAKYILKDDNAQRGGENARYEMVFDGDNAESPRRGTKHSGHDGNDLVERSISKQSSKDYIHRDRRDQEMVGSNNRDRYSDRSKGHRENNDNKARSDRSTRDVDSHAERKDKEKHIERQRDDWKDDRDSRKRNLDDSNVERRTSGDYRKTDSRHVERRDDREYSRDGGKRKKTGAADDSHEDRMDDRDYRKRREDRGRQDTKNDSRGRKRSSDEEDYRHRREEHGHRRRDIEFNDNIHRRHHSDRR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0721 607 MobiDBLite consensus disorder prediction 388 607 - -
Glsi14g0721 607 SUPERFAMILY RNA-binding domain, RBD 229 337 IPR035979 GO:0003676
Glsi14g0721 607 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Glsi14g0721 607 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Glsi14g0721 607 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Glsi14g0721 607 Pfam Zinc knuckle 340 356 IPR001878 GO:0003676|GO:0008270
Glsi14g0721 607 Gene3D - 200 325 IPR012677 -
Glsi14g0721 607 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 497 IPR035542 -
Glsi14g0721 607 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Glsi14g0721 607 CDD cyclophilin_RRM 4 169 IPR035538 -
Glsi14g0721 607 FunFam Peptidyl-prolyl cis-trans isomerase 182 323 - -
Glsi14g0721 607 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Glsi14g0721 607 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Glsi14g0721 607 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Glsi14g0721 607 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Glsi14g0721 607 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Glsi14g0721 607 ProSiteProfiles Zinc finger CCHC-type profile. 341 356 IPR001878 GO:0003676|GO:0008270
Glsi14g0721 607 SMART rrm1_1 244 317 IPR000504 GO:0003723
Glsi14g0721 607 CDD RRM_PPIL4 240 322 - -
Glsi14g0721 607 Gene3D - 1 172 IPR029000 -
Glsi14g0721 607 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Glsi14g0721 607 Gene3D - 334 417 - -
Glsi14g0721 607 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0721 Glsi-ChrGlsi14 8122461 8130062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0721 7 166 U-box Gene Family AT5G67530 40.000 1.52e-29 121