Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0720 ATGGACCAACAAACTCTTGTAGATCAAAACTTTCCTCTCTTTTCCAAACCTCGTAAACCCTCCAAAAACCCCTCACCGGCCGTCACAACCGCAGCCGCCGCCGCCAAAGATCCTAACTTTGATTCCCAACACCTTGAAAAATTGACAGATTCTGATTCTGATTCTACCGCTGTTCCTACAAATTTTGGGGAGCTTGGACTCGCCGAATGGGCGGTGAAGACGTGCTGGGAGCTTGGAATGCGCAAACCCCGGCGGGTCCAAGCTCATTGCATTCCCAAGATTATCGAAGGCCGCCATGTGCTGGGCATCGACGAGACCGGCAGTGGTAAGACTGCGGCGTTTGCTTTGCCGATTCTTCACCGCCTGGCTGAGCATCCCTACGGGGTTTACGCGTTGGTTGTGACGCCGACTAGAGAGTTGGCATTCCAACTAGCAGAGCAATTCAGGGCATTGGGATCGTGCTTGCATTTGCGGATAGCCGTGGTGGTTGGAGGGATGGACATGCTGAAACAAGCCAAAAATTTGATGGCCAGGCCGCATGTTGTGATTGCTACACCAGGGAGGATCAAGGTTTTGCTGGAGGAAAATCCTGATATTCCTCCTGTTTTTGCTAGGACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTTCTAGATGTTGGCTTTCAGGAGGAATTAAAATTCATCTTTCAGTGCTTACCAGAAAATCGGCAAAACCTATTCTTTTCTGCAACCACAACAACTAATCTACAAAAGTTGCATGAACGTTACCAAGATAAGGTTTACGTTTTTGAGGCCTATGAAGGCCTAAAAACAGTTGAGACTCTTAAGCAACAGATCATAGTTGTCCCCAAAAAAGTGAAGGAGGTTTATTTAATGCATACAGTGTCCAAAATGGAAGACATGGGCATTCGCTCTGCCATTATATTTATCTCCACATGCAGAGATTGTCATCGTCTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTGTATTCATTTAAATCGCAGGCTCAGAGGCTTGAAGCACTTCATCAATTTAAATCAGGGAAGGTTTCTATACTGCTTGCAACTGATGTTGCCAGCCGCGGTTTGGATATTCCAACAGTTGATCTTGTTATCAATTATGATGTTCCAAGGTTTCCAAGAGATTATGTTCATCGTGTAGGTCGTACTGCAAGGGCGGGTAGAGGAGGACTAGCACTGAGCATTGTCACCCCGAATGACATTGATCTCATTCATGAAATAGAAGCACTTCTTGAAAGGCAGCTTGAACCGCTTGAATACAAAGAGAATGAGGTGCTTTCTCTGATGAAAAAGGTTTTCAGTGCTAAAAATGTGGCAGAAATGAAGATGATGGATGATGGATTTGAGGAGAAAGCAAAAGTGCGAAAAAAGCAGAAACTGAAAATGCTAACAGAGAAAGGATTGTTAAAGAAAAGGAGAGAAAAGAGGAAAAGAAATAATGGCCTTGAGGAGAACGGAAAAGAACAGAAAAGAAAGTAA 1515 0.4462 MDQQTLVDQNFPLFSKPRKPSKNPSPAVTTAAAAAKDPNFDSQHLEKLTDSDSDSTAVPTNFGELGLAEWAVKTCWELGMRKPRRVQAHCIPKIIEGRHVLGIDETGSGKTAAFALPILHRLAEHPYGVYALVVTPTRELAFQLAEQFRALGSCLHLRIAVVVGGMDMLKQAKNLMARPHVVIATPGRIKVLLEENPDIPPVFARTKFLVLDEADRVLDVGFQEELKFIFQCLPENRQNLFFSATTTTNLQKLHERYQDKVYVFEAYEGLKTVETLKQQIIVVPKKVKEVYLMHTVSKMEDMGIRSAIIFISTCRDCHRLSLMLEVLDQEAAALYSFKSQAQRLEALHQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSIVTPNDIDLIHEIEALLERQLEPLEYKENEVLSLMKKVFSAKNVAEMKMMDDGFEEKAKVRKKQKLKMLTEKGLLKKRREKRKRNNGLEENGKEQKRK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0720 504 SMART helicmild6 318 399 IPR001650 -
Glsi14g0720 504 Pfam DEAD/DEAH box helicase 85 253 IPR011545 GO:0003676|GO:0005524
Glsi14g0720 504 CDD DEADc_DDX49 62 265 - -
Glsi14g0720 504 MobiDBLite consensus disorder prediction 469 504 - -
Glsi14g0720 504 Pfam Helicase conserved C-terminal domain 305 399 IPR001650 -
Glsi14g0720 504 MobiDBLite consensus disorder prediction 489 504 - -
Glsi14g0720 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 418 IPR027417 -
Glsi14g0720 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 91 264 IPR014001 -
Glsi14g0720 504 MobiDBLite consensus disorder prediction 1 36 - -
Glsi14g0720 504 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 210 218 IPR000629 -
Glsi14g0720 504 Gene3D - 271 502 IPR027417 -
Glsi14g0720 504 Gene3D - 29 264 IPR027417 -
Glsi14g0720 504 SMART ultradead3 79 279 IPR014001 -
Glsi14g0720 504 Coils Coil 484 504 - -
Glsi14g0720 504 CDD SF2_C_DEAD 276 408 - -
Glsi14g0720 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 275 438 IPR001650 -
Glsi14g0720 504 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 46 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0720 Glsi-ChrGlsi14 8115013 8120992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0720 31 412 Eukaryotic Initiation Factors Gene Family AT3G13920 31.969 5.56e-55 188