Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0711 ATGGAGTCATTGATTAGTAACAATGAGAAGATCGATGGACACCATATGTATAAACGCAAAAGAAAATACACTGCTTTTGAAGAAAGCAAATCATATTCCAGGAAAGCCATGTTGTTGAATTCAAAATCTCCTAAGGCAAAAACCGACGACCATGTAGACATACCAACGCGTGCTGTTGGAGGGGATGGACATTTTTATGTGTGCGTGATGTGCAATGATGTTGGAGAGTTACTTTGCTGTGATACCTGTTCATGTACTTATCATCTCCATTGCCTTGACCCTCCTCTAGCGTCTACGCCCGAAGGAGATTGGCAATGCCAAAACTGCTCTATCAATGACAAACTTTCAGAGCAAACATTAGATTTTGAAAGTGGGCTTTGCAACAAAATCCTATCTTTGAACGGGAAAAGTAGTGCCTCTTCTATTTGTTCCTTGTGTTCAAAGACGAAGAAGGTATTTATCTTGTCCGAAGATGAGGCTTTCACGTCAAAGTTCTCAAAGTGCAGTTCAGCTGATCGGCCCAACTTATCGGTTGGATTTGGTAAACTTCCAATGGAATCTCACGGAGGGCCTTCAGTTGCCGATGCTGAAATTTGTGGCACTAGCATACAACAAGCCCCCAACAAAGTCAAATATGATAAACTATTGATTCTTAGCAGTGCTAAGGTTCGTACAGGACAGAAAGACAAGTCGTCGGCTTTGAGGAACAGAAGCAAAGGGGATCTTTCAGGTTCGAGGCTAGATGAACGAAAGCAAAGCTCCAATCTCCGGATAGTCAAATATAGCGAAAGTGCTCAATCTGATGATTTAGCAAGTAACAGGAAAGGTGCAGATGGTCAACGTTCGTCTTCAATGACTGTGAGTGGCCAGGGCATCACTGTTCCAAGTATTTCATTAGATAAAAAGGATGGTTCGGCTACAGGTTTTGCGTCAAGTAGATCATACGGAAAAAGTATTGACACAATGACAACAGGGAAGCCTTCGGGGTTTCTTAAACGTAACGTAGAAAAGAATGCCTGGTCTGAGTTGGAACTTGATGCACTGTGGGTTGGTGTTCGTAGACATGGTCAAGGGAATTGGGACACCATTTTGGCAGATCCTTCTTTGAGACTTTTGAAGAACAAAACCCCTGAAGATCTATCCATGAAGTGGAACGAGGAGCTTCTCAAAATCTTCCCATCTCTGAGATCAACAAGCTCTGTACTTTCTGCTATTCCAGAGAGATCACTACCACCCTTATCAGATGCCACAACCACGCAGTTTCTGCACCCAAAAAGTCCCAGCTGGTGCCCGGTTGGTGTGGCAAATCAAAGTTCAATGTCAATGAATTTCATTCCCTCTGTGAAATATGGTATTCTGTGTTCTCAAAACCAAGGATCTTCCTCCAGAGTTTCTCATTCATTTCAAAAGGCCGACAGTGCTCCTCAATGGCGATCATCAAATAGTAACACGGAACCATCAATGGCTTCAGAACTTGTGTTTCAGACCCCCAATCAGAGGGCTAATATTGCAGAAACAAACATGGGGCCCATGAGAATGCAGGCATTAAAGACTCCAGCAGCAGCCATGGGTACAAAGACAAAATTGTCTTCAACTAGAACTGAGCCCAACCTCCTGCTGGGTGGTCATTTCCCGATTAGCAGGGTTGGGGTGGACCATAATGCAAGTGGCCCCAGCAACACTAAGCCAAATCCTTCTCAGGTCGAGACAGATGAAGAGTACTGA 1725 0.4388 MESLISNNEKIDGHHMYKRKRKYTAFEESKSYSRKAMLLNSKSPKAKTDDHVDIPTRAVGGDGHFYVCVMCNDVGELLCCDTCSCTYHLHCLDPPLASTPEGDWQCQNCSINDKLSEQTLDFESGLCNKILSLNGKSSASSICSLCSKTKKVFILSEDEAFTSKFSKCSSADRPNLSVGFGKLPMESHGGPSVADAEICGTSIQQAPNKVKYDKLLILSSAKVRTGQKDKSSALRNRSKGDLSGSRLDERKQSSNLRIVKYSESAQSDDLASNRKGADGQRSSSMTVSGQGITVPSISLDKKDGSATGFASSRSYGKSIDTMTTGKPSGFLKRNVEKNAWSELELDALWVGVRRHGQGNWDTILADPSLRLLKNKTPEDLSMKWNEELLKIFPSLRSTSSVLSAIPERSLPPLSDATTTQFLHPKSPSWCPVGVANQSSMSMNFIPSVKYGILCSQNQGSSSRVSHSFQKADSAPQWRSSNSNTEPSMASELVFQTPNQRANIAETNMGPMRMQALKTPAAAMGTKTKLSSTRTEPNLLLGGHFPISRVGVDHNASGPSNTKPNPSQVETDEEY 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0711 574 MobiDBLite consensus disorder prediction 265 305 - -
Glsi14g0711 574 CDD PHD2_CHD_II 67 109 - -
Glsi14g0711 574 ProSiteProfiles Myb-like domain profile. 332 388 IPR001005 -
Glsi14g0711 574 MobiDBLite consensus disorder prediction 545 574 - -
Glsi14g0711 574 MobiDBLite consensus disorder prediction 227 249 - -
Glsi14g0711 574 PANTHER PHD FINGER PROTEIN 36 192 - -
Glsi14g0711 574 SUPERFAMILY FYVE/PHD zinc finger 62 114 IPR011011 -
Glsi14g0711 574 ProSitePatterns Zinc finger PHD-type signature. 68 109 IPR019786 -
Glsi14g0711 574 ProSiteProfiles Zinc finger PHD-type profile. 65 112 IPR019787 -
Glsi14g0711 574 CDD SANT_TRF 340 384 - -
Glsi14g0711 574 SMART sant 336 390 IPR001005 -
Glsi14g0711 574 MobiDBLite consensus disorder prediction 228 249 - -
Glsi14g0711 574 SMART PHD_3 67 110 IPR001965 -
Glsi14g0711 574 Gene3D - 336 387 - -
Glsi14g0711 574 MobiDBLite consensus disorder prediction 553 567 - -
Glsi14g0711 574 MobiDBLite consensus disorder prediction 462 488 - -
Glsi14g0711 574 SUPERFAMILY Homeodomain-like 335 389 IPR009057 -
Glsi14g0711 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 126 IPR013083 -
Glsi14g0711 574 Pfam PHD-finger 68 110 IPR019787 -
Glsi14g0711 574 MobiDBLite consensus disorder prediction 265 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0711 Glsi-ChrGlsi14 8044630 8050661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0711 62 121 C2H2 Transcription Factor Family AT3G01460 38.333 4.36e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi14g0711 PHD 1.8e-07 CL0390