LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi14g0683	ATGAGTATTGAAACCCTTGAAATTCGAGGAGAGCAAAAGAGAAAAAGCGCTCGTAATTGGGGAAATAATGATTATGCAATTTCAGGGCTCGTTCAATTTAGAGAGGAGAGACAGAGCGCCAGGTTCGGCGACTGTAATCAGCAACTGCACTTACTAATCCAACACAGAAAACAAGGAAGGAAGCTTCGCAGCAAGCGGAAGAGCGAAGAAATGACGTTAGCCTTCGCAGCAGTGAGCCTACGCATTGCAAAGGGATATAGGAAGCTTGTCTCTGGCCCTTCACATTTGCTCTCCACGCAGGCCACCTCTCCTCCCTTCACTCGCCAGATAAGCATGGATGCACGGAGTGTTGCTTCTCAGCTCAGTAGTTGTGGTCTTTTGCGAACTCAGGGCCTTATTGGGGGTAAATGGAGAGATGCCTATGATGGCAAAACCATAAAGGTCTATAATCCGGCAACTGGTGACTCTATAGCAGATATCGCATGCATGGGTGCAAGAGAGACAGATGATGCAATTTCTTCAGCCTACGATGCATTTAAATCTTGGAGCAAAATCACTGCCGCTGAGAGGAGCAAATTTTTGAGAAAATGGTATGATTTGCTAATAGTGCACAAAGAAGAGCTTGCACAACTTATAACCTTGGAGCAAGGAAAGCCTCTTAAAGAATCTCTGGGCGAGATAAACTATGGGGCTAGTTTTATAGAGTTTTCGTCTGAGGAGGCAAAGCGTATATATGGGGATATAATTCCTGCACCTCTATCAGATCGGCGGTTGTTTGTTTTAAAGCAGCCTGTAGGGGTTGTCGGTGCAATCACTCCTTGGAACTTTCCTCTGGCTATGATTACCCGGAAGGTTGGTCCAGCCCTTGCATGCGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACTCCTCTCACAGCCTTGGCTGCAGCAGAGCTCTCTGTTCAAGCTGGAATACCAGCGGGTGTTGTGAATGTGGTTATGGGAAACGCACCTGACATTGGGGATGCTATACTTGCAAGTCCACAGGTAAGGAAGATCACATTTACTGGCTCAACAGCAGTTGGAAAGAAGTTGATGGCAGGTGCTGCGGGAACAGTTAAAAAAGTATCTCTGGAACTTGGTGGCAATGCACCTTGCATAATATTTGATGATGCTGATATTGATGTGGCAGTAAAAGGAACTGTTGCAGCAAAGTTCCGTAATAGTGGACAAACATGTGTTTGTGCCAATCGAATTCTTGTACAAGAAGGTATCTATGAGAAATTTGCAAATGCTCTCCTCGGTGCTGTTCAGAATATGAAAGTTGGGGATGGTTTTAGTGAAGATGTGGTTCAGGGACCTCTAATCAATGAAGCTGCTGTGAAGAAGGTTGAGTCGTTACTTCATGATGCTACCTCAAAGGGGGCAAAAGTAATTCATGGTGGTAAAAGACATAGCCTTGGATTAACTTTTTATGAACCAACAATCATCACTGATGTCAACAACGAGATGCTCATATCAAGAGAGGAAGTATTTGGACCTGTTGCTCCCCTTTTTAGGTTTAAAACTGAAGAGGATGCTATCAGAATTGCTAATGACAGTAATGCAGGGTTGGGTTCATACGTATTTACAAACAATGTTCAATGCTCATGGCGTGTCGCTGAAGCTCTTGAATATGGACTTGTGGGTGTCAACGAAGGAGTAATTTCAACAGAGGTGGCTCCATTTGGTGGCTTTAAACAGTCTGGCCTTGGAAGAGAAGGCTCCAAATATGGGATGGATGAATATTTAGAGATCAAGTATGTATGCTTGGGAAACATGAACAGAGACTGA	1815	0.4446	MSIETLEIRGEQKRKSARNWGNNDYAISGLVQFREERQSARFGDCNQQLHLLIQHRKQGRKLRSKRKSEEMTLAFAAVSLRIAKGYRKLVSGPSHLLSTQATSPPFTRQISMDARSVASQLSSCGLLRTQGLIGGKWRDAYDGKTIKVYNPATGDSIADIACMGARETDDAISSAYDAFKSWSKITAAERSKFLRKWYDLLIVHKEELAQLITLEQGKPLKESLGEINYGASFIEFSSEEAKRIYGDIIPAPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSVQAGIPAGVVNVVMGNAPDIGDAILASPQVRKITFTGSTAVGKKLMAGAAGTVKKVSLELGGNAPCIIFDDADIDVAVKGTVAAKFRNSGQTCVCANRILVQEGIYEKFANALLGAVQNMKVGDGFSEDVVQGPLINEAAVKKVESLLHDATSKGAKVIHGGKRHSLGLTFYEPTIITDVNNEMLISREEVFGPVAPLFRFKTEEDAIRIANDSNAGLGSYVFTNNVQCSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDEYLEIKYVCLGNMNRD	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi14g0683	604	FunFam	Succinate-semialdehyde dehydrogenase I	143	385	-	-
	Glsi14g0683	604	NCBIfam	succinate-semialdehyde dehydrogenase	148	594	IPR010102	GO:0009013\|GO:0009450
	Glsi14g0683	604	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	372	379	IPR029510	GO:0016491
	Glsi14g0683	604	FunFam	Succinate-semialdehyde dehydrogenase I	376	565	-	-
	Glsi14g0683	604	Pfam	Aldehyde dehydrogenase family	137	596	IPR015590	GO:0016491
	Glsi14g0683	604	CDD	ALDH_F5_SSADH_GabD	148	598	-	-
	Glsi14g0683	604	PANTHER	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	123	601	-	-
	Glsi14g0683	604	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	400	411	IPR016160	GO:0016491
	Glsi14g0683	604	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	376	565	IPR016163	GO:0016620
	Glsi14g0683	604	SUPERFAMILY	ALDH-like	125	602	IPR016161	GO:0016491
	Glsi14g0683	604	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	143	590	IPR016162	GO:0016491
	Glsi14g0683	604	FunFam	Aldehyde dehydrogenase, putative	568	594	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi14g0683	Glsi-ChrGlsi14	7568264	7584502	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi14g0683	85	603	Aldehyde Dehydrogenase Gene Family	AT1G79440	77.264	0.0	818