Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0657 ATGACTCAGCCATCGGTGCCTCCGCCGCCGTTGGCCCCGTCGCCGTCCCATGCCGGACAAGGTGTCCAAGTGCGCTGCGCCGGGTGCCGTATGATCTTGACCGTCGGGCCGGGACTGACGGAGTTCGCTTGCCCTACCTGTCGAATGCCGCAGATGCTTCCCCCGGAGCTCATGAGTAGGGCCCACCAGAAACCATCTCATCCACCTTTACTACCTGCTTCGTCGCAACAGCAGTCGCACGTGCCCGCCCATGGCATTGATCCCACTAAGATCCAGCTTCCCTGTGCTAGCTGCAAGGCCATCCTCAATGTGCCTCACGGCCTTACAAGGTTCTCTTGCCCGCAATGTGGGATTGACCTCGCTGTCGATATCTCTAAGGTCAAGCAGTTCTTCCCTCCTGGGCCTCCTCCCGAGGAAGTCAACGAGCTAGCTGTTGAAGTGGAGCGTGATGAAGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGGCCACCAAAAATATCTATTGGATCCTCGCACCCAGATCCTGTTGTGGAAACATCTTCCTTGTCAGCAGTGCAGCCACCTGAGCCTACTTATGATCCAAAAATTAAAGAGGATTTGGAAAGTTCAAAGACTTTGTCATGCTTACAAATTGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAGCACCTCCCTGATGGTGCTAGGGCAGGATTCTTTATTGGGGATGGAGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGACTTATTTGGGAAAACTGGCACCACAGAAGGAGAAAAGCCCTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTGGATGATGTGGGTGCAACTTGCATTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCGAAGTCTGTTGGGGTCAGGGAGGGAGTTGTTTTCTTGACATACAGTAGCCTCATTGCATCATCTGAGAAAGGTCGTTCTCGTCTCCAACAGCTTGTGCAGTGGTGTGGACCAGGATTTGATGGTCTTGTCATTTTTGATGAGTGTCACAAAGCAAAAAATTTGATACCTGAATCTGGTAGTCAGCCAACACGAACAGGTGAAGTAGTGCTTGATATCCAGGCTCGACTACCTGAAGCTCGTGTTATTTATTGCTCAGCTACTGGTGCATCTGAACCACGCAACATGGGTTATATGGTGCGACTTGGTCTTTGGGGAGCTGGGACTTCTTTCTCTGACTTCCGTGAATTTCTAGGCGCTCTTGATAGAGGGGGTGTTGGAGCACTTGAACTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGTCGGACACTTAGCTACAAGGGTGCTGAGTTTGAAGTTATTGAAGCACCATTAGAAGATGAGATGATGGACATGTATAAAAAGGCAGCAGAATTTTGGGCAGAATTGCGAGTGGAATTACTGTCAGCCAGTGCTTTCCTGAATAATGAGAAACCTAATTCTAGTCAGCTATGGCGATTATACTGGGCAAGCCACCAGCGTTTCTTTAGACATATGTGTATGTCTGCCAAGGTCCCTGCTACTGTGAGACTAGCGAAACAAGCATTAATGGAAGATAAATGTGTGGTCATTGGCCTTCAGAGTACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAGTTGCTGCTAAAATTTGTGGAAGAAAATTACCCATTGCCAGAAAAGCCTGAGCTTCTGCCAGGAGAGGATGGTGTAAAGGAGCTCCAAAGGAAAAGGCACTCAGCAACTCCTGGTGTTTCTATAAAAGGAAGGGTTAGAAAACTAGCTAAGTGGCAACCTCCTAGTGATGTTGAGAGTGATGAAGAATCTGAATTTGACTCTACTATTGAAACTACGGACTCTGATGAAGAATTTCAGATTTGTGAGATTTGCAATACTGAGGAGGAAAGGAAAAAATTGCTCCAGTGTTCCTGCTGTGGTAAATTGGTCCATGCAGCATGCTTGATGCCCCCCGTTAATGATTTAGTTCCTGAAGAATGGTCATGCCATTTGTGCAAGGAAAAAACAGATGAATATCTTCAAGCAAGACATGCCTACATAACTGAGCTCCAGAAGAGGTATGATGCAGCCTTGGAGCGCAAGACAAAAATATTGGAGATTATTCGTTCCTTGGATCTTCCAAACAATCCTTTGGATGATATTATTGACCAGCTAGGAGGACCTGACAAAGTTGCCGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCCCCTGGTGGGAAAGGTGTAACTTATCAGGCTCGTAATACAAAGGATGTCACTATGGAGATGGTCAACATGCATGAGAAACAGCTCTTTATGGATGGTAAGAAGTTAGTTGCTATCATATCTGAAGCTGGATCAGCTGGTGTTTCATTGCAGGCAGACAGAAGAGCTCCAAATCAGAAAAGAAGGGTTCATTTGACTCTAGAACTTCCCTGGAGTGCTGACCGAGCAATTCAACAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATACAGGTTACTTTTTACTAATCTTGGTGGAGAACGCCGATTTGCATCAATCGTTGCCAAGAGATTAGAATCTCTTGGTGCTTTGACTCAAGGGGACCGTAGGGCTGGACCTTCATTAAGTGCTTATAACTATGACAGTGCTTATGGAAAGAGAGCTCTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTTCCAGTTGTACCGCCAGGATGTATATCTGACAGACCAGATACAATCCAAGATTTTATTATTAAGGGAAAAGCTGCTCTTGTTTCTGTTGGAATAGTTAGGGACACAATTCTTGGTAATGGTAAAGATCTTGGAAAGTTATCTGGCCGCATTATAGATTCTGATATGCATGATGTTGGACGATTCCTCAACCGACTTTTGGGACTACCTCCTGAGATTCAAAATAGGCTGTTTGAGTTATTTGTGAGTATCTTGGATCTTCTCATTCAGAATGCTCGCATTGAAGGTAACCTTGATACAGGCATTCTTGACTTGAGAGCTAATGTTATTGAGCAACAAGGGGCTCCAAAGACAGTCCATGTGGATCAACTGACTGGGGCTTCAACTGTTCTGTTTACATTCATCTTGGATCGTGGGATCACATGGGAGTCTGCAAGTAACATGCTGAATGAAAAGCAAAAGGATGGGCTTGGTTCAGCTAACGATGGCTTCTATGAGTCCAAGAGGGAGTGGTTGGGAAGACGTCATTTCATTTTGGCATTTGAAAGTTCTGCTTCTGGGATGTATAAGATAGTTCGTCCCCCTGTCGGAGAGTCACTTCGGGAGATGCACCTGGCAGAATTAAAAAGTAAATATAGAAAAGTTTCATCTTTAGAGAAGGCTCAAACTGGTTGGGAAGACGAATATGAAGTTTCATCCAAACAGTGTATGCATGGTCCCAATTGTAAGCTTGGCAACTTCTGTACAGTTGGCAGAAGACTACAGGAAGTAAATGTCTTAGGTGGCCTCATTCTTCCAGTCTGGGGAACCATAGAGAAAGCCCTTTCTAAGCAGGCCCGCTTGAGTCATAGGAGGCTACGTGTTGTACGCATAGAAACTACTACAGATAACCAACGAATTGTTGGCCTTCTTGTTCCTAATGCAGCAGTTGAAACTGTGCTTCAAGATTTAGCATGGGTACAAGAAATCGATGATTGA 3762 0.4537 MTQPSVPPPPLAPSPSHAGQGVQVRCAGCRMILTVGPGLTEFACPTCRMPQMLPPELMSRAHQKPSHPPLLPASSQQQSHVPAHGIDPTKIQLPCASCKAILNVPHGLTRFSCPQCGIDLAVDISKVKQFFPPGPPPEEVNELAVEVERDEDEGGMVGETFTDYRPPKISIGSSHPDPVVETSSLSAVQPPEPTYDPKIKEDLESSKTLSCLQIETLVYACQRHLQHLPDGARAGFFIGDGAGVGKGRTIAGLIWENWHHRRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYSKLDSKSVGVREGVVFLTYSSLIASSEKGRSRLQQLVQWCGPGFDGLVIFDECHKAKNLIPESGSQPTRTGEVVLDIQARLPEARVIYCSATGASEPRNMGYMVRLGLWGAGTSFSDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYKGAEFEVIEAPLEDEMMDMYKKAAEFWAELRVELLSASAFLNNEKPNSSQLWRLYWASHQRFFRHMCMSAKVPATVRLAKQALMEDKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSIKGRVRKLAKWQPPSDVESDEESEFDSTIETTDSDEEFQICEICNTEEERKKLLQCSCCGKLVHAACLMPPVNDLVPEEWSCHLCKEKTDEYLQARHAYITELQKRYDAALERKTKILEIIRSLDLPNNPLDDIIDQLGGPDKVAEMTGRRGMLVRAPGGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAPNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCISDRPDTIQDFIIKGKAALVSVGIVRDTILGNGKDLGKLSGRIIDSDMHDVGRFLNRLLGLPPEIQNRLFELFVSILDLLIQNARIEGNLDTGILDLRANVIEQQGAPKTVHVDQLTGASTVLFTFILDRGITWESASNMLNEKQKDGLGSANDGFYESKREWLGRRHFILAFESSASGMYKIVRPPVGESLREMHLAELKSKYRKVSSLEKAQTGWEDEYEVSSKQCMHGPNCKLGNFCTVGRRLQEVNVLGGLILPVWGTIEKALSKQARLSHRRLRVVRIETTTDNQRIVGLLVPNAAVETVLQDLAWVQEIDD 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0657 1253 Gene3D - 200 404 IPR027417 -
Glsi14g0657 1253 PANTHER STRAWBERRY NOTCH-RELATED 21 1247 IPR026741 GO:0006355
Glsi14g0657 1253 MobiDBLite consensus disorder prediction 69 83 - -
Glsi14g0657 1253 FunFam Protein strawberry notch homolog 2 205 405 - -
Glsi14g0657 1253 SMART PHD_3 654 700 IPR001965 -
Glsi14g0657 1253 MobiDBLite consensus disorder prediction 156 199 - -
Glsi14g0657 1253 SUPERFAMILY FYVE/PHD zinc finger 647 705 IPR011011 -
Glsi14g0657 1253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 724 IPR013083 -
Glsi14g0657 1253 MobiDBLite consensus disorder prediction 59 83 - -
Glsi14g0657 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 417 IPR027417 -
Glsi14g0657 1253 ProSiteProfiles Zinc finger PHD-type profile. 652 702 IPR019787 -
Glsi14g0657 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 798 903 IPR027417 -
Glsi14g0657 1253 MobiDBLite consensus disorder prediction 176 190 - -
Glsi14g0657 1253 Pfam C-terminal domain on Strawberry notch homologue 743 1032 IPR026937 -
Glsi14g0657 1253 ProSitePatterns Zinc finger PHD-type signature. 655 699 IPR019786 -
Glsi14g0657 1253 Pfam PHD-finger 654 702 IPR019787 -
Glsi14g0657 1253 Pfam P-loop containing NTP hydrolase pore-1 175 474 IPR039187 -
Glsi14g0657 1253 MobiDBLite consensus disorder prediction 625 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0657 Glsi-ChrGlsi14 7266925 7290705 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi14g0657 AAA_34 1.6e-132 CL0023