Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0650 ATGCTGGACTTCCTTGCAATTTTTGGGGCCGTTGTGCCCATGTATGTTGCCATCGGCCTAGCCTTTGTCTCGGTTCGTTGGTGGAAAGTCTTCACGCCAGAACAATGCTCTGGAATCAACAAGTTTGTGAGCGACTTTGCGGTTCCCTTTCTTGTTCTGGACCTTCTCACATCCAATAACCCATACACTATGAATTTCCATGTCCTTGCTGCTGATGCTGTTCAGAAGATTGTCATTTTAGCTGCACTTGTTCTTTGGAAAATCCTGAGCAAGAATGGTAGCTTTGAGTGGGTGATTACTCTCTTCTCTCTCTCAACTCTTCCGAACACCCTTCTTATTGGACTCCCTGTGATCCAGTCCATGTATGGGGATAGCTCTGCTGCTCTGCTGATTCAAATTGTGGTTGTTCAAGCTGTAATATGGTTCAATCTGCTGCTGGCCATGTATGAGTATAGAGCGGCAAGGATCCTCATCTCAGACCAATTTCCAACCATTGCTGGGTCCATTGCCTCTGTTAGAGTTGACCCTGATGTTGTTTCTCTTGGTGACCACTCAGAACAATTAGAGGCTGATGTTGAGGTAGGTGCAAATGGGAAGCTCCATGTGGTGTTGAGAACGTCCTCTGCATCATCCAGGATTTCTATGGAGAGTACCAGCTCAGTACACTCTGCAAATGAGCTCAACTCAAGGGCTGGAGGTTCATTTTCCTTACAATCTTCAAAAAGAGCAGGAATTAGTAAATCTCACAGTACTTCAGGAAGGAACTTTCTTAGAAAGGGATCTAATAGCAGCAGAGTAGCAAATGCATCCTTTGATATTGATGTCATAGTTGAAGATTCTGAGCCTTCTCTTCATCAAACAACTTCAAGGAGTTCTACTAAAAACAGCGATGAAGGAGATGAAGGAAAGAAGGAAAATCCCCCAGCAGGAGTTGTAACAAGGCTCATCCTAGTCACAGTGTGGAGGAAGCTAATAAGAAACCCAGTCACCTATGCAAGTGTTGTAGGCCTCGCATGGTCTCTCATAGCATTCAGGGTCAACATCAAGTTGCCATTGATTATTAAAGGGAGCATAACAATTCTATCTAAAACAGGAGTAGGAATGGCAATGTTCAGTTTAGGTCTGTTTATTGCTCAACAACCCAAGATCATGGCCTGTAAACTATCCATATTGGTGACGTGTGCGGCTGTAAGGTTAATAGTAGGACCAGCAGTGATGGCCGGAGCTTCTGCTGCTATTGGTCTTCATAAAATTGTATTTCAGTCATCAACTGTCCAGGCTGCTCTTCCCTCGGCAATTGTTTGTTTTGTATTTTCCAAGCAATACCATGTCCACCCCGAGATATTTAGCACTTCGATCATCACTACAACAATTTTCTTCCTGCCAGTTACAATAGTCTGCTATTTTCTCTTGAGACTCATTCCATGTCCTCTTTTTCGCGGCTTCTTCTTTACACTGCCAAATCTGAGCGTTCCGAGTCTCAAAGCCTCAGAGTACAGAGCAGAAGTTCTCCTTCTCGGAGCCATGGCCACCACCACCACCACAACCGCTGCTCCTCCGCGCCAGCTATCTCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCGGAGGTTCACCTCGGGACCAAAAATTGTAATTTTCAAATGGAGCGCTATGTCTTCAAGCGCCGCAACGACGGTATTTACATAATCAACCTTGGAAAGACATGGGAGAAGCTTCAGCTAGCTGCAAGAGTTATTGTTGCCATAGAGAACCCTCAGGATATTATAGTTCAGTCTGCCAGGCCTTATGGTCAGAGGGCAGTTCTTAAGTTTGCTCAGTATACAGGTGCCCATGCCCTTGCAGGAAGGCACACTCCAGGAACATTCACTAACCAGCTCCAGACATCCTATAGTGAGCCTCGCCTTCTTATTCTAACTGATCCAAGAACGGATCACCAGCCCATTAAGGAAGCTGCTCTTGGAAATATACCAACTATTGCTTTTTGTGACACTGATTCTCCTATGCGGTATGTTGACATTGGCATTCCTGCCAATAATAAGGGGAAACACAGTATAGGTTGTCTCTTTTGGCTATTAGCAAGGATGGTACTGCAGATGCGGGGTACTATTCGTCCAGGTCTTAAGTGGGATGTTATGGTGGATTTATTCTTCTATAGAGAACCTGAGGAGACCAAACAACTAGAGGAAGATGAAGCACCTGCTGCCCCAGAATATGCCATTACTGACTTCAGTGCTACAAACATTGCTGCTGATGGCCAGTGGCCTGCTGCTATTGAACAGTCCTGGACTGATGCAGTTCCACAGCCTATTCCAGCAGCTCCTGGTGGCACTTGGGGCACAGAAGCAGGAGAATGGGGTGAATCTGTTCCAGCTCCACCTGTTCCTCTTCCACAAATTCCTGCTCCGCAAATTACTGCCCCCGGAACTGATACAGTGCCTGCTACTGGCTGGGAGATTTGA 2463 0.46 MLDFLAIFGAVVPMYVAIGLAFVSVRWWKVFTPEQCSGINKFVSDFAVPFLVLDLLTSNNPYTMNFHVLAADAVQKIVILAALVLWKILSKNGSFEWVITLFSLSTLPNTLLIGLPVIQSMYGDSSAALLIQIVVVQAVIWFNLLLAMYEYRAARILISDQFPTIAGSIASVRVDPDVVSLGDHSEQLEADVEVGANGKLHVVLRTSSASSRISMESTSSVHSANELNSRAGGSFSLQSSKRAGISKSHSTSGRNFLRKGSNSSRVANASFDIDVIVEDSEPSLHQTTSRSSTKNSDEGDEGKKENPPAGVVTRLILVTVWRKLIRNPVTYASVVGLAWSLIAFRVNIKLPLIIKGSITILSKTGVGMAMFSLGLFIAQQPKIMACKLSILVTCAAVRLIVGPAVMAGASAAIGLHKIVFQSSTVQAALPSAIVCFVFSKQYHVHPEIFSTSIITTTIFFLPVTIVCYFLLRLIPCPLFRGFFFTLPNLSVPSLKASEYRAEVLLLGAMATTTTTTAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKQLEEDEAPAAPEYAITDFSATNIAADGQWPAAIEQSWTDAVPQPIPAAPGGTWGTEAGEWGESVPAPPVPLPQIPAPQITAPGTDTVPATGWEI 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0650 820 Hamap 40S ribosomal protein SA [rps-0]. 517 758 IPR027498 GO:0003735|GO:0006412|GO:0015935
Glsi14g0650 820 MobiDBLite consensus disorder prediction 801 820 - -
Glsi14g0650 820 PRINTS Ribosomal protein S2 signature 560 569 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 PRINTS Ribosomal protein S2 signature 634 651 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 PRINTS Ribosomal protein S2 signature 530 548 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 PRINTS Ribosomal protein S2 signature 609 626 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 PRINTS Ribosomal protein S2 signature 651 662 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 PRINTS Ribosomal protein S2 signature 672 686 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 Pfam Ribosomal protein S2 631 697 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 Pfam Ribosomal protein S2 533 628 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 NCBIfam auxin efflux carrier 3 471 IPR014024 -
Glsi14g0650 820 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 3 472 - -
Glsi14g0650 820 MobiDBLite consensus disorder prediction 281 307 - -
Glsi14g0650 820 MobiDBLite consensus disorder prediction 232 260 - -
Glsi14g0650 820 SUPERFAMILY Ribosomal protein S2 525 715 IPR023591 -
Glsi14g0650 820 Gene3D - 529 735 - -
Glsi14g0650 820 ProSitePatterns Ribosomal protein S2 signature 1. 530 541 IPR018130 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 NCBIfam 30S ribosomal protein S2 526 721 IPR005707 GO:0003735|GO:0006412|GO:0015935
Glsi14g0650 820 CDD RPS2 533 699 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 ProSitePatterns Ribosomal protein S2 signature 2. 634 658 IPR018130 GO:0003735|GO:0005840|GO:0006412
Glsi14g0650 820 FunFam 40S ribosomal protein SA 529 735 - -
Glsi14g0650 820 Pfam Membrane transport protein 7 468 IPR004776 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0650 Glsi-ChrGlsi14 7188347 7195066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0650 509 792 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.427 3.06e-145 427