Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0629 ATGTCCTCCGCCACCGACACTACCACCGCCGATGCCGCCGCAGCGGCGACGGTGGAAGTAGAAATGAAGACTTACTGGTGCCATGAATGTGATATGAGTGTTGCTTTGCCGTCTTCTTCTTCAACTTCATCGTCCCCTTCTTCTTCTCTTCTCTGCCCCCATTGCCACACCCACTTCCTTGAACTCATGGACTCCCCTCCCTTCCCTCAATCTGACACGCACCCATTTCTCAGTCCCCTTTCCCTCTTCGATTCCCCCTATCTCCACCACCTAATCCAACACCACCTCATTGCCTCCGACGATGACCTGGAAGATGAGGACGACGACGACTTTGGAGACCTATTAGCTTTTCTCCCCCCACCAAGCTCTCTTCGGAGCTCCAAAGCTTGCTCTGATTCTATACCCACTATTCTAGTTACCTCTTCCTTGTTATCGCAGCTTGACCCAGGAGGGGTTCTCTGTGCTGTTTGCAAGGACCCAATTGGGGTTGATGCAGAGGCCAAGCAGCTTCCTTGTAATCATTTGTACCACTCTGATTGCATTAGCCCTTGGCTGGCGAATCACAATTCGTGCCCGCTTTGTCGGTTTCAGCTGGCCACAGAACAAGATGAGGGGTTTTCTCCGGCGAGAAGGATTAGAAGGCAGCTGAGAACGGCCATGATGAGGTTATCTGAGTTGATGGAAGAGGAGGATGATTTCTATGGATTAAGGACTACTCTGAGTCACATTGCTAGTAGGCACGGCGTTCTTTCATCTGCTATATCGGGGCGCAGGGATGAGAACCCTTCACCGTCTTTGGCACCCATTCAAACCACGGAAGCCGGTACCATCTCTGTTGGTGGCAACGCTAATTTGGAGACTCTTACGAGCTTTCCCATTGAACGAGGGGCATCATTTCTGCAAATTCATCACGGTATTAGGTATAGGGTGTTTAAATATCAAAGAAATCTTGAAGTTCGGTCACTATAG 969 0.5026 MSSATDTTTADAAAAATVEVEMKTYWCHECDMSVALPSSSSTSSSPSSSLLCPHCHTHFLELMDSPPFPQSDTHPFLSPLSLFDSPYLHHLIQHHLIASDDDLEDEDDDDFGDLLAFLPPPSSLRSSKACSDSIPTILVTSSLLSQLDPGGVLCAVCKDPIGVDAEAKQLPCNHLYHSDCISPWLANHNSCPLCRFQLATEQDEGFSPARRIRRQLRTAMMRLSELMEEEDDFYGLRTTLSHIASRHGVLSSAISGRRDENPSPSLAPIQTTEAGTISVGGNANLETLTSFPIERGASFLQIHHGIRYRVFKYQRNLEVRSL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0629 322 SUPERFAMILY RING/U-box 153 200 - -
Glsi14g0629 322 SMART ring_2 154 194 IPR001841 -
Glsi14g0629 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 76 198 - -
Glsi14g0629 322 Pfam Ring finger domain 154 195 IPR001841 -
Glsi14g0629 322 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Glsi14g0629 322 MobiDBLite consensus disorder prediction 256 273 - -
Glsi14g0629 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 209 IPR013083 -
Glsi14g0629 322 MobiDBLite consensus disorder prediction 253 273 - -
Glsi14g0629 322 Coils Coil 209 229 - -
Glsi14g0629 322 Pfam zinc-ribbon 24 63 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0629 Glsi-ChrGlsi14 7026812 7029355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0629 19 236 C3H Transcription Factor Family AT3G60080 39.689 5.20e-32 119