Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0622 ATGGAGCTTGATTTGAATGAGGAGCCTTTGGACCAAACCCCTACTTCTGTGACTGAATTTGATTCTATATTAAATGAGCTGGAATCTGAGCATGGACATATAGAAGAGCGTATTAGACACCTTGAAGCAGTAACTTACAGGGCTAGGCAGCGTCAGAGGTGGCGACAGGGTCATGGTTCAATTCAAATAAATAACACCATACCAGAATTGACAGCACCTAATGCTCAAAATGCAGGCAGGAGGCCCCAGGAAGAGGTTGGTTTTGCTTTCCATGGAAGAACAATCGACAATAGGAAAACGGGCAAAAGGAACAGCACCCATTTAATAGCTAAAGCATTGGGGATAGAGACAGATAGCAATAAGGCAGAGAGCAACACTGGGAATTGTTTTGATTGTTATATCTGCTTGGAAATGGCAAGAGATCCTATTTTAACCTGCTGTGGTCACTTGTTTTGTTGGCCATGCTTCTATCAGGTGTCATATGCTTATGCAAATGTAAAGGAATGCCCTGTTTGTAAAGGAGAGGTCACTGAAACAGGCATTATTCCAATTTATGGCAATTCAAGTGTCAATAGCAGCTGTCTGTTCGAGTTAAATAAAACTGGTTTGACAGTCCCACCTCGGCCCCATGCATGTAGAATTGAGGGTCTTAGGCAGCAGCTTATAAGCCAGGGAGCATCTTCTACAATCCAAGAGATTAGGCGGTTAAATAACTTTATTGGTGCAATAGGAGAGAGAGTTCTGTCAGAAAACCCTGAAACCACAACTGATAGAACTCTTTTTTCAGTTAATCCATCTCGCTATTCCCAGCCCCAACCATTATCTAGCATGCAGACAGAAAACAGTCAACATAATCGTTCCCATCAATTTTCAAGGTTGTTAGTGCAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCCTTAAATTCTGCAATGGATTCTGCAGAAAGATTAGTTGAGGACCTTGAATCATATCTTCATACTCACCGTACAGGAAGAATCAGAGAGAGAAGTACTCTTCGTGTTAATAGAGATTCATCTTTTAGCACTGCTGCTACAAGTACAAACCAATCAGAGAGTCATACTCCAGATGTTGGTGCAACCAATTCTGCAGCAACCTCCACTGTTTCTCCTTTGGGTATGAATGATGACACTACTGCGGTTATAGACTTGGAAATCCAAACACCAAATAGCAGTGTACAGAATAGTTCAACGGAGCCTTCTTCATCGTCCAGTAGAACTAATGTTTCGAGACCTTCTGACATTGGCAATGGGGTTTCAAATAGGCCCAGAAGGAGAAGGTTGAGATTACGATCTTCTATGGACCATATTGATTGA 1338 0.42 MELDLNEEPLDQTPTSVTEFDSILNELESEHGHIEERIRHLEAVTYRARQRQRWRQGHGSIQINNTIPELTAPNAQNAGRRPQEEVGFAFHGRTIDNRKTGKRNSTHLIAKALGIETDSNKAESNTGNCFDCYICLEMARDPILTCCGHLFCWPCFYQVSYAYANVKECPVCKGEVTETGIIPIYGNSSVNSSCLFELNKTGLTVPPRPHACRIEGLRQQLISQGASSTIQEIRRLNNFIGAIGERVLSENPETTTDRTLFSVNPSRYSQPQPLSSMQTENSQHNRSHQFSRLLVQGAASFSSLSSALNSAMDSAERLVEDLESYLHTHRTGRIRERSTLRVNRDSSFSTAATSTNQSESHTPDVGATNSAATSTVSPLGMNDDTTAVIDLEIQTPNSSVQNSSTEPSSSSSRTNVSRPSDIGNGVSNRPRRRRLRLRSSMDHID 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0622 445 SMART ring_2 132 172 IPR001841 -
Glsi14g0622 445 SUPERFAMILY RING/U-box 124 182 - -
Glsi14g0622 445 MobiDBLite consensus disorder prediction 336 382 - -
Glsi14g0622 445 MobiDBLite consensus disorder prediction 251 288 - -
Glsi14g0622 445 Pfam Prokaryotic RING finger family 4 132 178 - -
Glsi14g0622 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 193 IPR013083 -
Glsi14g0622 445 ProSiteProfiles Zinc finger RING-type profile. 132 173 IPR001841 -
Glsi14g0622 445 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 97 306 IPR045103 GO:0005783|GO:0006511|GO:0061630
Glsi14g0622 445 MobiDBLite consensus disorder prediction 394 445 - -
Glsi14g0622 445 MobiDBLite consensus disorder prediction 394 424 - -
Glsi14g0622 445 Coils Coil 24 44 - -
Glsi14g0622 445 MobiDBLite consensus disorder prediction 343 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0622 Glsi-ChrGlsi14 6983434 6984771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0622 112 392 C3H Transcription Factor Family AT3G58030 32.492 1.71e-32 126