Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0580 ATGACAACTGCAATCTTAACTTTCATCCTCTTCCTCTTGTCTCTGTTTCTGTATTTTGAGCTCAGATCCACGCTCAGAACGCTTAAGCACTTCAATCTTGGATTTCAATGCCCCAAATTGCAGATTAACTGTAAACCCTTTACGGCCTTTCAATTTTTTCTTTTGTTATTTGGGTATGATGGTCCCAAATACTACTATTCTGTTTACAATAGAAACGAGTTCAAGCATGCCATCATTTCCTCACTCCTCCTTGTCACCCTCGCAGGTTATCATACCTGTCAAGGAAATTGGCAAGATAAAATGAGTGTTCTGTATAGTCCTACTCTTAAGTACTCAGACGGGGAGCTTAGGAGAAACCAAGAAATGGATTCTAACAAGGGTCACACACAACAAAGTTGTCACCAGCAAAATTCTGGACTGTTGAGGTACCGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTTGTGGACAACAATAGCAGCCATGGCTGTGTGAATGAGGAAGCTTTTGGCGGTGATGATCAGCAGCAGCAGCAGCAACGTTATCAGCCATCCTTGGGTTCAGAAATGGAAACCATGCTGGCCAAGTTAATTTCATCCAACAATGGATGGAGCAATTCGGAGTCTTTGCACCAGTTTGGAGGAAAGCCTGTGAAGCAAGAAGCAGGGGACTCTGTTCCACAGGGACCACAACAAAATGGTTATAGTTCTCAGTTAATTTACCAATCTCAGGAAATTCAAGGCTTGCCAAATGGTTGTTTAAGTTCTGGGAATGGTTTTGATGGCTCTTCCAGTGTAATAAGCAGTATGGCTTCAGAGAACTCTAAAATGGGTCCTGGGAATTGTTCCAATCTAATTAGGCAGAGGAGCTCCCCTGCTGGGTTTCTCTCCAATCTCTCAGTTAAAAATGGTTTTGCAGCATTTGGAGAGGTGGGAAGTTTTAGGGGCTGTGATGTCTCAAATGGACAAGCTACGACCTCAACTGGTGGGTTGAATGGTAATATTACCTTGACTAGGAAATCTTCTTTCTCAAGGAGGATGCCTCAGATAGCTGAGAATGGAAATGAAAGCCTAGAAGCAACTTGTGTTGAAAGTAGAAACCTGGGAAATGACAATGGGAGCACTACTAAATGCCATATGCCTAGCTTCACCAGTGACTTCTGGGACAGTTCTACATTCGGTGCCCAGAAAACAGCCAGTGAGAATGATGAAATCATGTTTTCTATTTCAGATGCTTTGGAAACTCAGAATGCAGATTTTGGACATCAAAATCTTGGTTTGAGTCACCAATGGAGTTTTCCTAGTTCTACTAAGATGGCTGCCATAGAGAAGTTTTTGCAAGTTCAAGGATCTGTTCCTTGTAAAATTCGAGCTAAAAGAGGCTTTGCAACGCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACACGGATTAGTGAAAGAATAAAGAAGCTTCAAGAACTTTTCCCAAAATCAGACAAGCAAACAAGCACCGCAGATATGTTGGATCTGGCAGTAGATTATATTAAAGACCTGCAAGAACAAGTTCAGATACTAACGGATACTAGGGCAAAGTGCACTTGCTCAAGTATTCAGAAGCAGTACTGA 1605 0.4249 MTTAILTFILFLLSLFLYFELRSTLRTLKHFNLGFQCPKLQINCKPFTAFQFFLLLFGYDGPKYYYSVYNRNEFKHAIISSLLLVTLAGYHTCQGNWQDKMSVLYSPTLKYSDGELRRNQEMDSNKGHTQQSCHQQNSGLLRYRSAPSSLLASLVDNNSSHGCVNEEAFGGDDQQQQQQRYQPSLGSEMETMLAKLISSNNGWSNSESLHQFGGKPVKQEAGDSVPQGPQQNGYSSQLIYQSQEIQGLPNGCLSSGNGFDGSSSVISSMASENSKMGPGNCSNLIRQRSSPAGFLSNLSVKNGFAAFGEVGSFRGCDVSNGQATTSTGGLNGNITLTRKSSFSRRMPQIAENGNESLEATCVESRNLGNDNGSTTKCHMPSFTSDFWDSSTFGAQKTASENDEIMFSISDALETQNADFGHQNLGLSHQWSFPSSTKMAAIEKFLQVQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQELFPKSDKQTSTADMLDLAVDYIKDLQEQVQILTDTRAKCTCSSIQKQY 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0580 534 FunFam Transcription factor bHLH130 family 462 531 - -
Glsi14g0580 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 461 511 IPR011598 GO:0046983
Glsi14g0580 534 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 146 527 - -
Glsi14g0580 534 Gene3D - 463 532 IPR036638 GO:0046983
Glsi14g0580 534 MobiDBLite consensus disorder prediction 205 233 - -
Glsi14g0580 534 Pfam Helix-loop-helix DNA-binding domain 467 512 IPR011598 GO:0046983
Glsi14g0580 534 SMART finulus 467 517 IPR011598 GO:0046983
Glsi14g0580 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 523 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0580 Glsi-ChrGlsi14 6706354 6709213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0580 138 517 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.088 8.39e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi14g0580 HLH 2.3e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0580 14 6706354 6709213 Glsi04g2032 04 70609474 70613767 ECH
Glsi14g0580 14 6706354 6709213 Glsi14g0580 14 6706354 6709213 ECH