Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0579 ATGACTCGGCATAATTATTATCTTTATTGCATGCCAAGAATCAGCTTTAGTGCTTCTGTGGTTTGGTCTAGTACTCTGGATCAACTGCAAGCTTCACAGCTTCACATGTCTAACTGGCTTCCTCTTCTTTTAAGCTTGCTTGACAAACAGTGTGTTGCTGTAATCTGCGTTATTGCATTTGGCCGTTTGCTAATGGACAAAGGAGTGCCACCTACCCTCTTTGTTAATGATGGTTCATTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAGAAGAATGCAAAATTGGAGGAGTCTAAACCAATTAAAATTGTTTCAGGATCGTTGACTCCTAATCCCTCCATCAGCAAAACCTCTGTGGACTTTAAGGCTAATGATACACGGAAAACTTCCCAAGCTGGTTCGAGTGGCAAACTTGCTTTTAGTTTAAAACAAAAGTCAAAGCTAGTGCCACCGCCTGTTAAGTTAAGTGCTGATGAGGATGAAGAAGAAACAGATGCTAGCAATGTTTCAAGTGATGCACCACCAAAACGGCAAAAGTTGGGGCAGGAGGATGACATTCAACAATCAACGAGACAAGTTAATGGTGCACCTTCTTCCCCAAGTGATCCTTCAGTGAAGAAAGTTGCTGACAAACTGGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTGACACGACAAAAAAATCCAGGGGATACACCTTTCAAATTTTTATTCAATGAGAAATGTGCTGACTACAAATATTACGAGCATCGACTAGCTCAGGAGGAAAAGGCCCTAGCGCAGTCGAGGGAATTACAGACATCTCATAATGGGGGTACAAGCACTTCATCTTCCAGACTAACAAATGTCCCTCAGATATCATCTCAGCAGCATTCATCTTACCAAATCCCTGCATCTGCTTTATATGAAAGTGCTGAAGATCCAAGAGTTTATGGATCTTCAGGTCAAGCAGCATCAGTGGGAAGCACTGATGAGACTGGTGGATCATCAAATGCTGATTCTTTAGCGCTCATGGAGTTCTACATGAAGAAAGCTGCACAGGAAGAGAAGATGAAACAACCTAAGCAATCAAAAGATGAGATGTCCCCGCCTGCTTCTCTTCAAGGTCCTGTGAAAAAAGGTCATCACATGGGTGATTACATTCCTCCAGAGGAACTTGAGAAGTTCTTGGCTAACTGTAATGATGCAACAGCACAGAAAGCTGCCAGGGAGGCTGCAGAGAGGGCTAAAATTCAGGCTGATAATGTGGGTCACAAGCTCTTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGAAGCTCCAGAAAGGGTATTTCAGATCCGATCATGGCAGGTAATGTTAAGCTGAACAACTTGGGGGTTGGTGCTAACCAACCTGGGGAGGTGACTCCTGAAGATGACATATATGAGCAGTTCAAAAAGCGGATGATGCTTGGTTATCGATACAGACCCAACCCCTTGAACAATCCTCGCAAGGCTTATTACTGA 1509 0.4347 MTRHNYYLYCMPRISFSASVVWSSTLDQLQASQLHMSNWLPLLLSLLDKQCVAVICVIAFGRLLMDKGVPPTLFVNDGSFMERFKQLQQEQEKKNAKLEESKPIKIVSGSLTPNPSISKTSVDFKANDTRKTSQAGSSGKLAFSLKQKSKLVPPPVKLSADEDEEETDASNVSSDAPPKRQKLGQEDDIQQSTRQVNGAPSSPSDPSVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFNEKCADYKYYEHRLAQEEKALAQSRELQTSHNGGTSTSSSRLTNVPQISSQQHSSYQIPASALYESAEDPRVYGSSGQAASVGSTDETGGSSNADSLALMEFYMKKAAQEEKMKQPKQSKDEMSPPASLQGPVKKGHHMGDYIPPEELEKFLANCNDATAQKAAREAAERAKIQADNVGHKLLSKMGWKEGEGLGSSRKGISDPIMAGNVKLNNLGVGANQPGEVTPEDDIYEQFKKRMMLGYRYRPNPLNNPRKAYY 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0579 502 Coils Coil 81 101 - -
Glsi14g0579 502 MobiDBLite consensus disorder prediction 352 379 - -
Glsi14g0579 502 Gene3D Surp module 193 268 IPR035967 GO:0003723|GO:0006396
Glsi14g0579 502 MobiDBLite consensus disorder prediction 222 241 - -
Glsi14g0579 502 SMART G-patch_5 417 464 IPR000467 GO:0003676
Glsi14g0579 502 MobiDBLite consensus disorder prediction 266 300 - -
Glsi14g0579 502 Pfam Surp module 210 260 IPR000061 GO:0003723|GO:0006396
Glsi14g0579 502 ProSiteProfiles G-patch domain profile. 419 466 IPR000467 GO:0003676
Glsi14g0579 502 Pfam G-patch domain 420 463 IPR000467 GO:0003676
Glsi14g0579 502 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 65 502 IPR040169 -
Glsi14g0579 502 MobiDBLite consensus disorder prediction 313 337 - -
Glsi14g0579 502 MobiDBLite consensus disorder prediction 117 144 - -
Glsi14g0579 502 ProSiteProfiles SURP motif repeat profile. 211 254 IPR000061 GO:0003723|GO:0006396
Glsi14g0579 502 MobiDBLite consensus disorder prediction 188 204 - -
Glsi14g0579 502 MobiDBLite consensus disorder prediction 321 337 - -
Glsi14g0579 502 SMART surpneu2 209 263 IPR000061 GO:0003723|GO:0006396
Glsi14g0579 502 SUPERFAMILY Surp module (SWAP domain) 200 262 IPR035967 GO:0003723|GO:0006396
Glsi14g0579 502 MobiDBLite consensus disorder prediction 265 300 - -
Glsi14g0579 502 MobiDBLite consensus disorder prediction 117 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0579 Glsi-ChrGlsi14 6692772 6696992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0579 415 475 C2H2 Transcription Factor Family AT5G26610 43.548 3.02e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0579 14 6692772 6696992 Glsi14g0579 14 6692772 6696992 ECH