LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi14g0573	ATGGCTCAGAAAACTGAGAAGGAGGAGACGGAGTTTAAGGTTCCTGAAACCATAATCCCCTGCGTCAACAACTGCGGTGTCACCGGCAATCCGGCCACCAACAACATGTGCCAGAACTGCTTCAACGCCACCACCCCCACTACTTCCTCCTCATCAGTCTCATCCACCGGGATTTCAGCGCCTTCTAAATGTGTCGACGAGAAGGCTTCCAGATCTAGCACGTCTCGTTCGCCCAAGAGGTCCTACCCTTCCGATGAGCCAACAGCCAATCTTACGACGGATCGTTCGAAGCCAGACGAGTCGATGCCTTCGGAAGCGAAGCGGGTCGTGAATCGGTGCTCCGGATGCCGACGGAAGGTCGGGTTGACCGGGTTCCGCTGCCGGTGCGGGGAGCTATTCTGCGCCGAGCATAGGTACTCTGATCGCCACGATTGCAGCTACGACTACAAAGCCGCCGGACGGGAGGCGATCGCGAGGGAAAATCCGGTGGTCAAAGCTGCTAAGATTGTCAAACTTTGA	519	0.5645	MAQKTEKEETEFKVPETIIPCVNNCGVTGNPATNNMCQNCFNATTPTTSSSSVSSTGISAPSKCVDEKASRSSTSRSPKRSYPSDEPTANLTTDRSKPDESMPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVVKAAKIVKL	172

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi14g0573	172	ProSiteProfiles	Zinc finger AN1-type profile.	107	153	IPR000058	GO:0008270
	Glsi14g0573	172	MobiDBLite	consensus disorder prediction	45	61	-	-
	Glsi14g0573	172	SUPERFAMILY	AN1-like Zinc finger	97	166	IPR035896	-
	Glsi14g0573	172	FunFam	Zinc finger AN1-type containing 6	87	168	-	-
	Glsi14g0573	172	Gene3D	-	88	168	IPR035896	-
	Glsi14g0573	172	Pfam	A20-like zinc finger	19	42	IPR002653	GO:0003677\|GO:0008270
	Glsi14g0573	172	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	21	67	-	-
	Glsi14g0573	172	ProSiteProfiles	Zinc finger A20-type profile.	15	49	IPR002653	GO:0003677\|GO:0008270
	Glsi14g0573	172	SMART	AN1_Zf_4	113	150	IPR000058	GO:0008270
	Glsi14g0573	172	SMART	A20_3	18	42	IPR002653	GO:0003677\|GO:0008270
	Glsi14g0573	172	Gene3D	-	1	87	-	-
	Glsi14g0573	172	MobiDBLite	consensus disorder prediction	75	97	-	-
	Glsi14g0573	172	PANTHER	AN1-TYPE ZINC FINGER PROTEIN	19	171	-	-
	Glsi14g0573	172	Pfam	AN1-like Zinc finger	113	150	IPR000058	GO:0008270
	Glsi14g0573	172	FunFam	Zinc finger A20 and AN1 domain-containing stress-associated protein 1	1	65	-	-
	Glsi14g0573	172	MobiDBLite	consensus disorder prediction	45	104	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi14g0573	Glsi-ChrGlsi14	6665587	6666105	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi14g0573	8	172	C2H2 Transcription Factor Family	AT3G52800	42.262	9.14e-35	118

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi14g0573	14	6665587	6666105	Glsi04g2024	04	70525086	70525577	ECH
	Glsi14g0573	14	6665587	6666105	Glsi14g0573	14	6665587	6666105	ECH