Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0566 ATGTCTAAGAGGATTCTTTGCAAGTTCTTTGCCCATGGAGCATGTTTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGGGTCTGTGCCTATGGTAGTCGTTGCAGATATGATCACGTCAAAGCTTCTCGTGAACAGTCCTCCATTTCATCTTCTTCAGCAAGTGTACACCAGGCCCTGGTTTCAGATCCTGCCGTATGTGGTAATACTAGAGGAGTTACGTCAAATGGGGATGGGGTTGCTACAGCTCCAGAATTTTCTTCTTTTAGCCGCCCTTCCCTTCATCCCATTATTCCTGCATGGAATCTAGAATCTGAGTATCATATTCCTGCCTGGAATCAAGAATCCTTATCTGAGTGTCATATTCCTGCCTGGAATCAAGAATCCTTATCTGAGTGTCATATTCCTGCATGGAATCAAGAATCTGAGCATAACGATCTCCTAGAGGAAGGTGATGTTGGTGAATCCAGATTAATTGCACCTTCTGAGCGTCCAATTTGTTCATTTGCTGCTGCTGGTAACTGTCCGCGAAAGGAAAATTGTCCTCAGATTCACGGAGATTTGTGTCCTACCTGTGGAAAACACTGCTTGCATCCTTTTCGACCTGAGGAAAGAGAAGAACATATGAAGATTTGTGAAAAAAAGCAAAAGCATCTTGAGGCATTGAAACGCAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCAAAGCCTACAGCAGCTGAACGTAAGTTTGGGCTGCTATCTGAATGTGATCACCCCTTCTGCATATCCTGTATAAGGAATTGGCGTAGTAGTAACCCGACCATGGGAATGGATGTCAACAGCACATTGAGGGCCTGTCCAATCTGTCGCAAGCTATCTTACTTTGTCATTCCAAGTGTCATTTGGTACTCTTCAATTGAAGAAAAAAAGGAAATCATTGACAGCTACAAGGAAAAGCTCCAGTCCATTGATTGCAAGCATTTTGATTTTGGGCATGGGAACTGCCCTTTTGGAACTAGTTGTTTCTACAAGCATGCATACCGAGATGGCAGACTTGAGCAGGTAGTTCTGCGACATCTTGGGGCTGCAGATGGAAACGCAGTGATTGCTAAAGACATCAGGCTGTCGGATTTCCTTGCTAACATGCATTTAAGATGA 1194 0.433 MSKRILCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASREQSSISSSSASVHQALVSDPAVCGNTRGVTSNGDGVATAPEFSSFSRPSLHPIIPAWNLESEYHIPAWNQESLSECHIPAWNQESLSECHIPAWNQESEHNDLLEEGDVGESRLIAPSERPICSFAAAGNCPRKENCPQIHGDLCPTCGKHCLHPFRPEEREEHMKICEKKQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTMGMDVNSTLRACPICRKLSYFVIPSVIWYSSIEEKKEIIDSYKEKLQSIDCKHFDFGHGNCPFGTSCFYKHAYRDGRLEQVVLRHLGAADGNAVIAKDIRLSDFLANMHLR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0566 397 SMART ring_2 244 301 IPR001841 -
Glsi14g0566 397 SMART c3hfinal6 176 201 IPR000571 GO:0046872
Glsi14g0566 397 SMART c3hfinal6 331 359 IPR000571 GO:0046872
Glsi14g0566 397 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Glsi14g0566 397 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Glsi14g0566 397 Coils Coil 318 338 - -
Glsi14g0566 397 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Glsi14g0566 397 SUPERFAMILY RING/U-box 232 308 - -
Glsi14g0566 397 CDD RING-HC_MKRN 242 302 - -
Glsi14g0566 397 Pfam RNA-binding, Nab2-type zinc finger 180 200 - -
Glsi14g0566 397 Pfam RNA-binding, Nab2-type zinc finger 336 358 - -
Glsi14g0566 397 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Glsi14g0566 397 ProSiteProfiles Zinc finger C3H1-type profile. 331 360 IPR000571 GO:0046872
Glsi14g0566 397 ProSitePatterns Zinc finger RING-type signature. 268 277 IPR017907 -
Glsi14g0566 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 307 IPR013083 -
Glsi14g0566 397 Gene3D - 33 85 - -
Glsi14g0566 397 ProSiteProfiles Zinc finger C3H1-type profile. 175 202 IPR000571 GO:0046872
Glsi14g0566 397 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Glsi14g0566 397 Pfam Zinc finger, C3HC4 type (RING finger) 244 301 IPR018957 GO:0046872
Glsi14g0566 397 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Glsi14g0566 397 ProSiteProfiles Zinc finger RING-type profile. 244 302 IPR001841 -
Glsi14g0566 397 Gene3D - 1 32 - -
Glsi14g0566 397 PANTHER MAKORIN-RELATED 5 377 IPR045072 GO:0000209|GO:0061630
Glsi14g0566 397 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Glsi14g0566 397 Pfam CCCH-type zinc finger 6 26 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0566 Glsi-ChrGlsi14 6616078 6619076 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi14g0566 zf-C3HC4 4.2e-07 CL0229