Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0565 ATGTCTAAGAGGGCTTGTAAGTTCTATGCCCGTGGAGCATGTCTGAAAGGGGAGCAATGTGATTATTCTCATGACAGAAAGGACACTCCAGCAGATATTTGCACTTTCTATCAGAAAGGACACTGCTCTTATGGTAGTCGATGCCGATATAAACATGTCAAAGCTTCAGCACATTCAGCATCATCTTCAGCAAATGGTCACCAATCTCTGGCTTCAAATTCTGTTGTAGCTCGTAATTCTAGAGGAAAATCAAGTTGGGTTCCAAAGAACGCAAAGGTGTCTCCCTCTGACAAAGTTGCAAGGAGATTACGTCATAAGCATCAGGATTCTCTGAAAAATGGTGATGTTGGTGAATCCAGTACTCCTATAGCGGCTGAGCATTACTTTTGTACATTTGCTGCTGCTAATTGTCCCTTAGGAGAAAAATGCTTACGCATTCACGGAGACCAGTGTCTATACTGTAGAAAGTACTGCTTGCATCCTACTGAACATAAGGAAAGAGAGAATCATTTGAATACTTGTGAAAAAAAGGAAAAGTACTTTCAGGCATTGAAAAATAGTCAAGAAATAGAGTGTAATGTTTGCTTGGAGTATGTTCTTTCTAAGCCTAATGCAGCTGAACGTAAGTTTGGGCTGCTTCCTGAGTGCGACCATGCTTTCTGTTTATCCTGTATCAGGAATTGGCGTAATAGTAATAGTGCTCCGACCTCGGGAATGGACTTCACTAATACTAATAGTAATACAGTGAGGACCTGCCCAGTGTGTCGCAAGCTATCATATTTTGTAATTCCAAGTGCTATATGGTATTCCACAAAGGAAGAGAAGCAGGAAATTATTGACAGCTACAAGGCAAAGTGCAAGTTGATTGATTGCAAGCATTTTGACTTTGGCAATGGTAATTGTCCATTTGGGATAGGTTGTTTCTACAAGCATACTGTGAAGCCTGGCTCAGAGACATGGAAACATGGCAGGCCACCACGTCCTCGTGGACGCAGAGCAAATAATATGGAAATGTATGACATGTTAGATATGCTCAGTGAATTTGATTTAGAAAGTGGAGAATTTTACTCCATCATGGGTGATTCAGAGTTTTTTGAAGATATGGACCCATTTGAGATGATGGCTGTGTCAGATATGCTGGCTTCTGGTTCAGGGCCTAGTTTTGGTGCTGAAGATTCTGATGATGAAGAAATGGATTTTTTTCAGATGGCTGCTTTATCACAAGCGCTGGGTTCTCCTTTTGAGGATTCAGATGATGATGAATTGAATCCTATGCAGGCAGCATTGTTATCAATGATGATGCATTCTAATATGTCAGAGGAATCTAGTGATGAGGATGACTAG 1344 0.41 MSKRACKFYARGACLKGEQCDYSHDRKDTPADICTFYQKGHCSYGSRCRYKHVKASAHSASSSANGHQSLASNSVVARNSRGKSSWVPKNAKVSPSDKVARRLRHKHQDSLKNGDVGESSTPIAAEHYFCTFAAANCPLGEKCLRIHGDQCLYCRKYCLHPTEHKERENHLNTCEKKEKYFQALKNSQEIECNVCLEYVLSKPNAAERKFGLLPECDHAFCLSCIRNWRNSNSAPTSGMDFTNTNSNTVRTCPVCRKLSYFVIPSAIWYSTKEEKQEIIDSYKAKCKLIDCKHFDFGNGNCPFGIGCFYKHTVKPGSETWKHGRPPRPRGRRANNMEMYDMLDMLSEFDLESGEFYSIMGDSEFFEDMDPFEMMAVSDMLASGSGPSFGAEDSDDEEMDFFQMAALSQALGSPFEDSDDDELNPMQAALLSMMMHSNMSEESSDEDD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0565 447 ProSiteProfiles Zinc finger C3H1-type profile. 285 314 IPR000571 GO:0046872
Glsi14g0565 447 SUPERFAMILY RING/U-box 180 262 - -
Glsi14g0565 447 MobiDBLite consensus disorder prediction 80 117 - -
Glsi14g0565 447 SUPERFAMILY CCCH zinc finger 29 52 IPR036855 GO:0046872
Glsi14g0565 447 Pfam RNA-binding, Nab2-type zinc finger 290 311 - -
Glsi14g0565 447 Pfam RNA-binding, Nab2-type zinc finger 130 148 - -
Glsi14g0565 447 Pfam RNA-binding, Nab2-type zinc finger 5 24 - -
Glsi14g0565 447 Gene3D - 1 31 - -
Glsi14g0565 447 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Glsi14g0565 447 SMART c3hfinal6 125 149 IPR000571 GO:0046872
Glsi14g0565 447 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Glsi14g0565 447 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Glsi14g0565 447 SMART c3hfinal6 285 313 IPR000571 GO:0046872
Glsi14g0565 447 ProSiteProfiles Zinc finger RING-type profile. 192 256 IPR001841 -
Glsi14g0565 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 288 IPR013083 -
Glsi14g0565 447 CDD RING-HC_MKRN 190 256 - -
Glsi14g0565 447 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Glsi14g0565 447 ProSitePatterns Zinc finger RING-type signature. 216 225 IPR017907 -
Glsi14g0565 447 SMART ring_2 192 255 IPR001841 -
Glsi14g0565 447 MobiDBLite consensus disorder prediction 95 113 - -
Glsi14g0565 447 Pfam Zinc finger, C3HC4 type (RING finger) 192 255 IPR018957 GO:0046872
Glsi14g0565 447 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Glsi14g0565 447 PANTHER MAKORIN-RELATED 1 368 IPR045072 GO:0000209|GO:0061630
Glsi14g0565 447 Gene3D - 32 86 - -
Glsi14g0565 447 Pfam CCCH-type zinc finger 33 52 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0565 Glsi-ChrGlsi14 6608867 6613929 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi14g0565 zf-C3HC4 1.2e-07 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0565 14 6608867 6613929 Glsi14g0565 14 6608867 6613929 ECH