Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi14g0564 | ATGCCCCTCCATCCTCACTACTATTACTCTTCCTTTACTTCTCAATCCACCTTCTCTTCCTCTTACCCTCTTGTTCACACCTCAAACACCAGATTTTCCATTCAATTCCAAGCTTCACCATCATCATCATCGTCCTCTTTCGGCCTTCCTTCTCCTCCTCCTCTCAGAGAAGCCCTTCCTCTCATAAACAACCTAAGCCTGAAAAAAGAGAAGCACAAGGAAAGTCATGAACCACCTTCAAGCATTATTGCACTAGAAGATCAGGAAGAGGACAAGAAAATGAACAAAGAGGAGAGTCTTTCGGCTAGTACTGATCATCAAGAACATCATCACAATCATGAAACTGTAACTGTAGCCCTACGCATAGGACTTCCTAGTACTACTGCTACTTCTGGTTTGGGTTCGTCGACGAAGACGTTCTCATCATCAAATTCCATTGAAACGGCAGAAAAAGAAGAAGTGAGTGTCGTTTCTGGACACTCTTTGGATCGATCAAACAAGGGTCAATACTGGATTCCCACTCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGCCCTGTGTGTTCCAAGACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCTGATTCTCTAAGAGGAACACAACCCACAGCCATGCTAAGGCTTCCGTGCTTTTGCTGTGCACCAGGTTGCAAGCACAACATTGACCATCCAAGAGCAAGGCCTCTGAAAGATTTTAGAACACTCCAAACACATTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAAATGCAGCAAAGCTTTTGCAGTGAAAGGAGATTGGAGAACACACGAGAAGAACTGTGGTAAAATATGGTATTGCCTTTGTGGGTCTGATTTCAAACACAAAAGGTCTCTTAAAGACCACATTAAGGCTTTTGGCCTTGGCCATGGAGCTTTTGGGATTGATTGCTTGCAAGAAGATGATGAAGCAGCCTCTGGGATTGAACATGATGGGGAAAACTCAATGTGA | 1041 | 0.4361 | MPLHPHYYYSSFTSQSTFSSSYPLVHTSNTRFSIQFQASPSSSSSSFGLPSPPPLREALPLINNLSLKKEKHKESHEPPSSIIALEDQEEDKKMNKEESLSASTDHQEHHHNHETVTVALRIGLPSTTATSGLGSSTKTFSSSNSIETAEKEEVSVVSGHSLDRSNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGLGHGAFGIDCLQEDDEAASGIEHDGENSM | 346 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi14g0564 | 346 | PANTHER | ZINC FINGER PROTEIN WIP2 | 23 | 338 | IPR043584 | GO:0003700|GO:0010468 | |
| Glsi14g0564 | 346 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 187 | 207 | IPR013087 | - | |
| Glsi14g0564 | 346 | MobiDBLite | consensus disorder prediction | 127 | 151 | - | - | |
| Glsi14g0564 | 346 | Gene3D | Classic Zinc Finger | 247 | 318 | - | - | |
| Glsi14g0564 | 346 | FunFam | zinc finger protein WIP2-like | 184 | 207 | - | - | |
| Glsi14g0564 | 346 | SUPERFAMILY | beta-beta-alpha zinc fingers | 253 | 289 | IPR036236 | - | |
| Glsi14g0564 | 346 | SMART | c2h2final6 | 269 | 289 | IPR013087 | - | |
| Glsi14g0564 | 346 | SMART | c2h2final6 | 185 | 207 | IPR013087 | - | |
| Glsi14g0564 | 346 | MobiDBLite | consensus disorder prediction | 127 | 160 | - | - | |
| Glsi14g0564 | 346 | FunFam | Zinc finger protein WIP2 | 238 | 320 | - | - | |
| Glsi14g0564 | 346 | Gene3D | Classic Zinc Finger | 184 | 207 | - | - | |
| Glsi14g0564 | 346 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 185 | 212 | IPR013087 | - | |
| Glsi14g0564 | 346 | MobiDBLite | consensus disorder prediction | 69 | 113 | - | - | |
| Glsi14g0564 | 346 | SUPERFAMILY | beta-beta-alpha zinc fingers | 178 | 207 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi14g0564 | Glsi-ChrGlsi14 | 6600770 | 6603655 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi14g0564 | 55 | 339 | C2H2 Transcription Factor Family | AT3G57670 | 58.044 | 1.64e-122 | 356 |
Transcription factors information