Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0562 ATGAATGATGGTAGACCAACGGAGGTGCATTACATTAATACTGGTTTTCCATATACTGTTACTGAAAGCTTCATGGAGTTCTTTGAAGGCCTCACTCACGTGCCCGCGAATTATGCCCATGCTGTACCAATGCACGATCAGTCTGTACAGGAAAGTATCTACTGGTCAATGAACATGAACCCATATAAATTTGGATTTTCTGGTCCTGGGAGTACATCTTATTATGGTTCTTATGAGGTAAATTATAATTTACCAAGAATGGAGGTCAACAGGGGAGAGTGGGAATATCCTTCAACTATGACCGCTGAGGAGCCCACTCCAACAGACTCTCCATCCAGAAGGGATGGAATCACAAGCATGCAGACCATCCCTGAAGAATGCAGTCCAAATCGTCATGATTCTAGTAGTGCTCAGGTCATATGGCAAGACAATATTGATCCTGATAATATGACTTATGAGGAATTACTGGACTTGGGTGAGGCAGTAGGAACTCAAAGCCGAGGTCTTTCTCAAGAACTTATAGATTTGCTTCCAACCTCAAAATTCAAATTTGGTAGCTTATTCAAAAGAAAAAATTTTGGGAAAAGGTGTGTGATCTGCCAGATGACGTATAGAAGAGGCGACCAACAAATAAAATTACCATGCAGGCATGTTTACCATGGCGAATGCATCACTAAATGGCTTAGCATTAACAAGAAATGCCCAGTTTGCAACGTTGAGGTATTTGGTGAGGAATCAACGCATTAG 747 0.415 MNDGRPTEVHYINTGFPYTVTESFMEFFEGLTHVPANYAHAVPMHDQSVQESIYWSMNMNPYKFGFSGPGSTSYYGSYEVNYNLPRMEVNRGEWEYPSTMTAEEPTPTDSPSRRDGITSMQTIPEECSPNRHDSSSAQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDLLPTSKFKFGSLFKRKNFGKRCVICQMTYRRGDQQIKLPCRHVYHGECITKWLSINKKCPVCNVEVFGEESTH 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0562 248 MobiDBLite consensus disorder prediction 101 117 - -
Glsi14g0562 248 ProSiteProfiles Zinc finger RING-type profile. 197 238 IPR001841 -
Glsi14g0562 248 Pfam Ring finger domain 196 238 IPR001841 -
Glsi14g0562 248 SUPERFAMILY RING/U-box 196 242 - -
Glsi14g0562 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 244 IPR033276 GO:0004842|GO:0016567|GO:0046621
Glsi14g0562 248 SMART ring_2 197 237 IPR001841 -
Glsi14g0562 248 FunFam E3 ubiquitin ligase BIG BROTHER 159 242 - -
Glsi14g0562 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 242 IPR013083 -
Glsi14g0562 248 MobiDBLite consensus disorder prediction 98 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0562 Glsi-ChrGlsi14 6572787 6576503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0562 3 248 C3H Transcription Factor Family AT3G63530 57.661 4.11e-104 300