Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0559 ATGGGGAAGGACCAGAAAATGAACAATAATATTAACAACGTTGTTAATAAGAGCAAGCTAAGGAAGGGGTTGTGGTCGCCTGAGGAAGATGAGAAACTGATAAGGTACATGTTGACCAATGGACAAGGTTGCTGGAGTGACATTGCTAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGCTGTCGTCTTCGCTGGATTAATTACCTAAGACCTGACCTCAAGAGGGGTGCATTCTCTCTCCAAGAAGAAGAACTCATCGTTCATTTGCATTCCATTCTTGGCAACAGATGGTCTCAGATTGCAGCACGTCTTCCAGGACGTACGGACAATGAGATTAAGAACTTCTGGAATTCTACCTTGAAAAAACGGATGAAAAACAACGCTACTAGTACTTCCACTCCTTCACCAAACAACAGCACAGACTCATCAGATCAGGCAAGAGATCAAGTTCATAATGGGATCGTCATGCCCTTCCATATTAACCAAGATCTCATGACCATGAATATGTGTTTGGACTCCTCTAATTCATCCTCTTCATCCTCCTCCTCCTCAATGCAAGCCATGGTTTTTGGTGACCATCTTCTTCATCACCAATTGGAATATCCCTTTTCCATGATGAATCAGTGTACAGCAGGAGGTTTCCCTGACATGACCCAAGTTGGTAACAATGGTGGAGTGGCAGATTATGGGTTTTATGGTGACTATGGGGTTTTAGAGAGTGATAAAATAGGGTTAGAAAGAGACCTCTCTCTTCCTCCACTAGAAAGTAGAAGCAGCATGGAGGAGAATAATAGTGCCCCAATTGATGTGAAAAGCTATAGCAACAACAACAACAACCACTTCAATAATAGTTGCTTCAATAACACTGAAGATGATCAGATTCATCATCGTCGTCAGATCAGCTCCTCCAAAGTAGATAAGGATTTGTTTGGGTTTGGAAATGTTAATAATCACGGGCAATTAGGGGAAAACTTAAGAATGGGAGAATGGGATTTTGAGGGGTTGATGCAAGATATATCCTCTTTTCCTTTCCTTGATTTCCAAAGTTGA 1050 0.419 MGKDQKMNNNINNVVNKSKLRKGLWSPEEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSLQEEELIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKNNATSTSTPSPNNSTDSSDQARDQVHNGIVMPFHINQDLMTMNMCLDSSNSSSSSSSSSMQAMVFGDHLLHHQLEYPFSMMNQCTAGGFPDMTQVGNNGGVADYGFYGDYGVLESDKIGLERDLSLPPLESRSSMEENNSAPIDVKSYSNNNNNHFNNSCFNNTEDDQIHHRRQISSSKVDKDLFGFGNVNNHGQLGENLRMGEWDFEGLMQDISSFPFLDFQS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0559 349 CDD SANT 77 120 IPR001005 -
Glsi14g0559 349 SMART sant 74 122 IPR001005 -
Glsi14g0559 349 SMART sant 21 71 IPR001005 -
Glsi14g0559 349 CDD SANT 25 69 IPR001005 -
Glsi14g0559 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Glsi14g0559 349 FunFam MYB transcription factor 19 75 - -
Glsi14g0559 349 Gene3D - 76 151 - -
Glsi14g0559 349 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Glsi14g0559 349 MobiDBLite consensus disorder prediction 123 146 - -
Glsi14g0559 349 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Glsi14g0559 349 Gene3D - 19 75 - -
Glsi14g0559 349 FunFam Transcription factor MYB46 76 149 - -
Glsi14g0559 349 Pfam Myb-like DNA-binding domain 25 84 - -
Glsi14g0559 349 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Glsi14g0559 349 PANTHER MYB DOMAIN PROTEIN 55 15 290 - -
Glsi14g0559 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0559 Glsi-ChrGlsi14 6551673 6554366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0559 16 348 MYB Transcription Factor Family AT3G08500 47.278 3.16e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi14g0559 Myb_DNA-bind_6 2.5e-13 CL0123