Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0541 ATGGTGGTTAATCCTCTTAACCGTCATTGGATAACTATCAATTCTACATATGCCAACATTGAAAACCCCCACTTGCGCCATCCGAGACTAGCTCAGATGGGTGGTTCAGGGTATGCAACAAACATCAAGTTTTTGAATATAGCAATGCAAAATGTAACGTATCCCATAATCATAGATCAAAACTACTGTGATCAAGAAGAACCATGCCAACAGCAGGGATCAGCTGTGCAACTGAGCAATGTGGTGTACCAAAACATAAGAGGAACAAGTGCCTCAGAAGTGGCCATCAAATTTGACTGCAGCAGAACCTTCCCTTGCAAAGATATCTACATTCAAGATGTGATCTTAAAGCCAGAAAGGAATGGACGTGCCATAGCTTCATGTGATAATGTTAGATTTGTGCACAGAGGAAAGGTTTTCCCTCAGTGCTCTCCCTATTGA 441 0.4195 MVVNPLNRHWITINSTYANIENPHLRHPRLAQMGGSGYATNIKFLNIAMQNVTYPIIIDQNYCDQEEPCQQQGSAVQLSNVVYQNIRGTSASEVAIKFDCSRTFPCKDIYIQDVILKPERNGRAIASCDNVRFVHRGKVFPQCSPY 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0541 146 SUPERFAMILY Pectin lyase-like 24 144 IPR011050 -
Glsi14g0541 146 Gene3D - 7 141 IPR012334 -
Glsi14g0541 146 PANTHER - 33 131 - -
Glsi14g0541 146 Pfam Glycosyl hydrolases family 28 34 132 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0541 Glsi-ChrGlsi14 6385336 6389944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0541 34 144 Glycoside Hydrolase AT3G57510 52.252 4.29e-32 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1844 04 67393272 67394308 Glsi14g0541 14 6385336 6389944 CCT
Glsi14g0541 14 6385336 6389944 Glsi14g0541 14 6385336 6389944 ECH