Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0539 ATGGAGGCCGCGGTCGTCGACGCCGGCTCAAAGCTCCTCAAAGCGGGATTTGCAATTCCTGATCAGGCCCCCGCTATGATAATTCCCACTCAGATGAAACGCATGGTTGATGATGGACCAGTGCCTGATAATTCATTAGTTGATGATGTTACCATTGATCCAGTTGTGCGGGGATTTGTTAGAGATTGGGATGCGATGGAGGATTTGTTGCACCATGTGTTGTACACTGGCCTGGGATGGGAAATGGGCAATGAAGGACAAATACTATTTACAGATCCTCTTTGTACCCCAAAGGCCAACAAAGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGCTTTTATGCCTCAGAACAAGCAGTGTTATCATTATATGCTGTGGGACGCATCTCAGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCACCACATTGCCTCTAGAAGATTTGAGTTTGGAGGTGTGGATCTAACAAATTTTCTGGCTCAAGAACTTGGCAAATCAAATCCGCTAGTAACTATCAGCATGTCTGATGTTGAGAAAATAAAAGAGCAATACTCATGTTGTGCTGAAGATGAATTAGCTTATCAAAAGATCCAAGATTCTTGTCCTGTGGAGAAACATACCCTTCCTGATGGACAGGTGATAACAATTGGAAGAGAAAGATACACTGTTGGTGAGGCTTTATTCCAGCCATGTCTTTTGGGTTTAGAGACTCATGGAATTGTAGAACAGCTTGTACGTACTATTTCAACTGTGTCATCTGATAATCATCGGCAACTGCTGGAAAATACTGTGGTTTGTGGTGGTCCTTCTTCTATGACCGGTTTTGAAGAGAGGTTTCAGAAGGAAGCTAACCTGACTTCATCTGCTGTTCGACCTACTCTTGTTAAGCCTCCAGAATACATGTCAGAAAATTTGACCACGTATTCAGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTCCCTCAAAATCAGCATGTAACTAAGGCAGACTATGACGAAACAGGACCTTCCATTGTTCATCGAAAATGTTTCTGA 1086 0.4273 MEAAVVDAGSKLLKAGFAIPDQAPAMIIPTQMKRMVDDGPVPDNSLVDDVTIDPVVRGFVRDWDAMEDLLHHVLYTGLGWEMGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGVDLTNFLAQELGKSNPLVTISMSDVEKIKEQYSCCAEDELAYQKIQDSCPVEKHTLPDGQVITIGRERYTVGEALFQPCLLGLETHGIVEQLVRTISTVSSDNHRQLLENTVVCGGPSSMTGFEERFQKEANLTSSAVRPTLVKPPEYMSENLTTYSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHRKCF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0539 361 FunFam Actin-related protein 7 165 252 - -
Glsi14g0539 361 Gene3D - 5 355 - -
Glsi14g0539 361 PANTHER ACTIN 4 354 IPR004000 -
Glsi14g0539 361 FunFam Actin-related protein 7 4 127 - -
Glsi14g0539 361 Gene3D - 123 324 - -
Glsi14g0539 361 Pfam Actin 2 361 IPR004000 -
Glsi14g0539 361 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
Glsi14g0539 361 SMART actin_3 1 361 IPR004000 -
Glsi14g0539 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
Glsi14g0539 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Glsi14g0539 361 PRINTS Actin signature 100 113 IPR004000 -
Glsi14g0539 361 PRINTS Actin signature 217 233 IPR004000 -
Glsi14g0539 361 PRINTS Actin signature 23 32 IPR004000 -
Glsi14g0539 361 PRINTS Actin signature 125 144 IPR004000 -
Glsi14g0539 361 CDD NBD_sugar-kinase_HSP70_actin 4 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0539 Glsi-ChrGlsi14 6365824 6372432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0539 1 361 Cytoskeleton Gene Families AT5G09810 37.731 3.43e-71 225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0539 14 6365824 6372432 Glsi14g0539 14 6365824 6372432 ECH