Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0536 ATGCTCGAGACCTCATGCCAGAGAAGATTTTTGGCCTGTGCGGATAATATGGCTAATATCACACATAAGAACCACAAGATGCTAACTATGAGTGTGTTTATTTCAATCACCTGGATCCACGAAGATGTAAATGATGATGATTGGGTTGAGGAGGAATCTATTGAGAACCTAGGGCATTGCTTGGAGCCTGCATCAAAGTCAGCCATTGATGGTTTAAAGAGTGTGAAGGTTGAACAAGAAGAAAAATGTGGTTGTGTGATTTGTTTAGAAGATTTTGTGGTGGACTCAAAAGTTGTTCGTATGCCTTGCTCGCATTTATTTCATAGAATTTGTATAGTTAATTGGCTGCAGAGGGGTCATTCTTGTCCTTTGTGTCGGTTTCAGATGCCTACAAGTGAATATCCTTTGAATAATTAG 417 0.3957 MLETSCQRRFLACADNMANITHKNHKMLTMSVFISITWIHEDVNDDDWVEEESIENLGHCLEPASKSAIDGLKSVKVEQEEKCGCVICLEDFVVDSKVVRMPCSHLFHRICIVNWLQRGHSCPLCRFQMPTSEYPLNN 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0536 138 SUPERFAMILY RING/U-box 84 131 - -
Glsi14g0536 138 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 48 130 - -
Glsi14g0536 138 SMART ring_2 85 125 IPR001841 -
Glsi14g0536 138 Pfam Ring finger domain 85 126 IPR001841 -
Glsi14g0536 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 132 IPR013083 -
Glsi14g0536 138 ProSiteProfiles Zinc finger RING-type profile. 85 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0536 Glsi-ChrGlsi14 6353612 6354028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0536 63 133 C3H Transcription Factor Family AT5G15820 42.667 1.47e-15 70.1