Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g0358 ATGGTGAAGATGGAAGATGGCAAGTCTTCAGTTGCCTCAGCCAACAATTTGCAGGATGATGGCGAACATGGTGACCCCCTTGAGTCTAGATTCACAGAGTTCTGCAAGAATGGGCTATCATTGGATCAGAAAAGTTTTACGCAAGTAATGAAGCTGTTTGGAGAAACCAAATACCTTCTACTGACAAATATCTCATCTATTGGGATTGGAACGTCTGAAGAAGCAGAGAGGTATTGGTTTTCATTTATTATATACTCTGTTAAGAGGTTGGCCGATAAAAATGCGGATGGTGAGAAGGAAGAGACTGATTACAATGGGCTTACCTTGTGCCAGATACTGAGAGTGGCGAAGCTCAACATTGCAGACTTTTTTAAAGAACTTCCTCAGTTTGTTGTTAAGACTGGTCCAATTTTAAGTGTTCTATATGGGACAGATTGGGAAAACAGGCTTGAGGCGAAAGAGCTTCAAGCCAATGTTCTTCACTTAAGCAGTCTTAGCAAGTACTATAAACGAGCATTCAGAGAATTCTTCTTGGAAGATGATGCAAATGTTGAAAATCACTCATCTATTACTGTTCATGCATCCAAATACCATCGATTTGGATGGTTACTTTTCTTGGCACTTCGTGTACACGCTTTTGGCCGTTTTAAAGACTTGGTAACTTGGACCAATGGTTTAGTTTCTATCTTGGCTATCTTGATTATTCACGTTCCTGCTTGTTTTCGGAATTTCAACATCCGTGACTCTTCACGCTTTGTTAGGAAAGGTAGCAAAGGTGTGGACCTCCTTGCATCACTTTGCAACATGTATGACACTTCAGAAGATGATTTGAGGAAATCCATGGAGAAAGCCAATAATTTAATTGCTGATATATTAAACATGAAGCCTTGTTTGGCATCTGAATGCAAAACTGAGAACCTTGAGAACTTTGATAGAGATGGTTTGATCTATTTTGAAGATCTAATGGAGGAATCATCTCTGCCGTCCAGTTTAAAAATCTTAGAAAATGATTATGATTACGCTATTCGTAACAAGGGTGAACTAGATGAGAGGTTGTTCATTAATGAGGAGGACAGCTTGTTAGCTTCAGGAAACTTTTCGGGAAGTTCTATGTTAGCAAGTGGTGTCAAGAGGAAATTTGATTCATTGGCATCACCTGCAAAGACAATTACAAGTCCACTCTCTCCCTGCTGCTCTCCTACATCTCATGTAAATGGAATTCTTGGTAGCACAAATTCAAAGATGGCAGCCACCCCTGTAAGCACTGCAATGACTACTGCAAAGTGGCTTCGTACTGTCGTCTCTCCACTTACATCAAAGCCCTCACCAGATCTGGAGAGATTCCTGACATCATGTGATAGGGATGTTACAAGCGATGTGGGGTGCAGGGCACAGATTATATTGCAGGCTATATTTCCAAATAGTCCTCTGGGAGAACGATGTGTAAATGGAAGTCTGAAAAGTGTAAACCTAATGGATAATGTCTGGGCAGAGCAACGAAGAATGGAAGCCCTGAAGTTATATTATAGGGTTTTGGAAGCAATGTGCAGAGCAGAAGCCCAAATACTGCATGCAACTAATTTAACCTCACTATTAACTAATGAGAGGTTCCATAGATGTATGCTTGCATGTTCTGCGGAATTAGTCCTGGCAACTCATAAGACTGTGACAATGTTGTTTCCAGCTGTATTAGAGAGGACTGGAATAACAGCTTTTGATCTTAGCAAGGTAATAGAAAGTTTCATTAGACATGAGGAATCTCTCCCAAGAGAAATAAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTTTGGGAAAAGGGTTCCTCAATGTATAATTCTTTGACAGTTGCCAGACCTGCCCTCTCTGCAGAAATTAATCGTCTAGGATTGTTAGCTGATCCAATGCCATCGTTGGATGCAATTGCAATGCATATTAACTTTTCTTGTCGAGGGTTTACCCCAGTGTCTTCCTTGCAGAAGCTTGAGACTTCACCAAGTCTTAATGGGGATACCAGGTCTCCAAAGCGACTTTGCACAGAGTATAGAAATGTGCTGGCAGAACGGAATTCCTTTACATCGCCGATGAAGGATCGGCTTCTGCCTTTCAGCAACCTTAAGTCAAAGTTACCCCCGCCTCCTTTGCAGTCTGCATTTGCCAGTCCAACAAGACCAATCCCAGGAGGCGGAGGGGAAACATGTGCAGAAACTGGGATTAGTATTTTTTTTGGCAAGATCATTAAGCTGGCAGCCGTCAGAATCAGTGGCATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTTTACTTTCTCTTTCAACAGATCCTAAATCAACAGACATCTCTCTTTTTCAACCGCCATATTGATCAGATAATTCTCTGCTGTTTCTATGGAGTTGCAAAGATTTTGCAACTGAGCCTAACTTTTAAGGAGATCATTTACAACTACAGAAAGCAACCACAATGCAAACCACAAGTTTTTCGCAGTGTATTTGTTGATTGGTCATTGGCACGCCGTAATGGGAGAACAGGGCAGGAGCATGTTGATATCATTACATTTTACAATGAAATATTCATTCCCTATGTAAAGCCTTTGCTAGTTGAGCTTGGCCCTGGTGGAACAACTACAAAAAGTAATAGGGTACCTGAAGTCAACAATAACAAAGACGGTCATTTGGCTCAGTGCCCTGGATCCCCTAAAATATCTCCATTTCCAAGCCTTCCTGATATGTCTCCAAAAAAAGTGTCTGCCACACACAATGTATACGTCTCTCCATTACGATCGTCGAAGATGGATGCTTTAATATCACATAGCTCGAAAAGTTACTATGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCGAAAGACCTGTCTGCCATCAATAATCGTTTGAATGGCACTCGGAAGGTCAGAGGTCCCCTGAACTTTGATGATGTAGATGTTGGCTTGGTTAGTGACTCTATGGTTGCAAACAGCCTCTATCTTCAGAATGGCAGTAGTGCTTCCTCCTCAGGTGCACCATTGAAGTCTGAGCGACCTGACTCCTAG 3078 0.4188 MVKMEDGKSSVASANNLQDDGEHGDPLESRFTEFCKNGLSLDQKSFTQVMKLFGETKYLLLTNISSIGIGTSEEAERYWFSFIIYSVKRLADKNADGEKEETDYNGLTLCQILRVAKLNIADFFKELPQFVVKTGPILSVLYGTDWENRLEAKELQANVLHLSSLSKYYKRAFREFFLEDDANVENHSSITVHASKYHRFGWLLFLALRVHAFGRFKDLVTWTNGLVSILAILIIHVPACFRNFNIRDSSRFVRKGSKGVDLLASLCNMYDTSEDDLRKSMEKANNLIADILNMKPCLASECKTENLENFDRDGLIYFEDLMEESSLPSSLKILENDYDYAIRNKGELDERLFINEEDSLLASGNFSGSSMLASGVKRKFDSLASPAKTITSPLSPCCSPTSHVNGILGSTNSKMAATPVSTAMTTAKWLRTVVSPLTSKPSPDLERFLTSCDRDVTSDVGCRAQIILQAIFPNSPLGERCVNGSLKSVNLMDNVWAEQRRMEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPREIRRHLNSLEERLLESMVWEKGSSMYNSLTVARPALSAEINRLGLLADPMPSLDAIAMHINFSCRGFTPVSSLQKLETSPSLNGDTRSPKRLCTEYRNVLAERNSFTSPMKDRLLPFSNLKSKLPPPPLQSAFASPTRPIPGGGGETCAETGISIFFGKIIKLAAVRISGMVERLQLSQQIRENVYFLFQQILNQQTSLFFNRHIDQIILCCFYGVAKILQLSLTFKEIIYNYRKQPQCKPQVFRSVFVDWSLARRNGRTGQEHVDIITFYNEIFIPYVKPLLVELGPGGTTTKSNRVPEVNNNKDGHLAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLSAINNRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSSASSSGAPLKSERPDS 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g0358 1025 FunFam Retinoblastoma-related protein 1 694 906 - -
Glsi14g0358 1025 SUPERFAMILY Cyclin-like 426 621 IPR036915 -
Glsi14g0358 1025 MobiDBLite consensus disorder prediction 1006 1025 - -
Glsi14g0358 1025 CDD CYCLIN_AtRBR_like 743 874 - -
Glsi14g0358 1025 Pfam Domain of unknown function (DUF3452) 102 236 IPR024599 -
Glsi14g0358 1025 FunFam Retinoblastoma-related protein 1 421 609 - -
Glsi14g0358 1025 Gene3D - 197 355 - -
Glsi14g0358 1025 FunFam Retinoblastoma-related protein 1 197 355 - -
Glsi14g0358 1025 SUPERFAMILY Cyclin-like 741 913 IPR036915 -
Glsi14g0358 1025 Gene3D - 693 894 - -
Glsi14g0358 1025 Pfam Retinoblastoma-associated protein B domain 743 870 IPR002719 GO:0005634|GO:0051726
Glsi14g0358 1025 Gene3D - 421 609 - -
Glsi14g0358 1025 SMART DUF3452_2 90 236 IPR024599 -
Glsi14g0358 1025 SMART RB_A_2 418 619 IPR002720 GO:0005634|GO:0051726
Glsi14g0358 1025 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 26 1023 IPR028309 GO:0006357|GO:0051726
Glsi14g0358 1025 SMART cyclin_7 756 874 IPR013763 -
Glsi14g0358 1025 MobiDBLite consensus disorder prediction 1 23 - -
Glsi14g0358 1025 Pfam Retinoblastoma-associated protein A domain 418 619 IPR002720 GO:0005634|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g0358 Glsi-ChrGlsi14 4469009 4475849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g0358 23 1025 Core Cell Cycle Gene Families AT3G12280 70.768 0.0 1403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Glsi14g0358 RB_A 2.5e-65 CL0065